Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 1.7e-87 325.9 153 100.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.0e-63 246.9 142 81.7
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 3.8e-63 245.0 148 73.6
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 9.4e-62 240.4 141 78.7
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 1.6e-61 239.6 147 74.1
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 1.6e-61 239.6 145 76.6
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 2.7e-61 238.8 143 74.1
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 4.7e-61 238.0 148 74.3
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 8.0e-61 237.3 146 74.0
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 8.0e-61 237.3 143 75.5
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.0e-60 236.9 151 72.8
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 2.3e-60 235.7 143 74.8
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 2.3e-60 235.7 143 74.8
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 2.3e-60 235.7 138 78.3
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 5.2e-60 234.6 143 74.1
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 1.1e-59 233.4 143 74.8
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.1e-59 233.4 150 72.7
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.5e-59 233.0 143 74.8
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.0e-59 232.6 143 73.4
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 3.3e-59 231.9 148 72.3
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 3.3e-59 231.9 149 73.2
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.7e-59 231.1 143 73.4
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 7.5e-59 230.7 143 73.4
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 2.8e-58 228.8 146 73.3
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.3e-58 227.6 155 68.4
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 8.2e-58 227.3 154 70.8
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 1.4e-57 226.5 137 74.5
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.8e-57 226.1 146 70.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.4e-57 225.7 149 69.8
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 4.1e-57 224.9 142 70.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 9.1e-57 223.8 147 73.5
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 1.2e-56 223.4 150 69.3
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.0e-56 222.6 146 69.2
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 3.5e-56 221.9 138 71.7
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 4.5e-56 221.5 144 68.8
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 4.5e-56 221.5 143 72.7
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 5.0e-55 218.0 145 69.7
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 5.0e-55 218.0 152 69.1
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 1.1e-54 216.9 148 67.6
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.1e-54 216.9 143 69.9
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.1e-54 216.9 150 67.3
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.5e-54 216.5 148 68.2
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.5e-54 216.5 147 69.4
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 2.5e-54 215.7 145 65.5
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 3.2e-54 215.3 143 69.9
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 3.2e-54 215.3 153 67.3
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 3.2e-54 215.3 143 67.8
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 5.5e-54 214.5 148 66.9
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 7.2e-54 214.2 152 65.8
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 2.1e-53 212.6 132 72.7
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 2.1e-53 212.6 144 68.8
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 2.1e-53 212.6 138 65.9
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 2.7e-53 212.2 151 65.6
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 2.7e-53 212.2 151 65.6
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 2.7e-53 212.2 151 65.6
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 2.7e-53 212.2 138 71.0
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 2.7e-53 212.2 141 70.2
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 4.7e-53 211.5 148 62.8
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 8.0e-53 210.7 143 63.6
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 1.4e-52 209.9 153 66.0
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.8e-52 209.5 143 65.0
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 3.0e-52 208.8 157 65.0
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 5.2e-52 208.0 151 64.2
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 5.2e-52 208.0 151 64.2
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 5.2e-52 208.0 151 64.2
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 6.8e-52 207.6 152 65.1
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 2.0e-51 206.1 152 65.1
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 2.6e-51 205.7 131 74.0
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 7.5e-51 204.1 133 68.4
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 7.5e-51 204.1 139 66.2
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.7e-50 203.0 142 66.9
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.7e-50 203.0 140 67.1
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 8.3e-50 200.7 140 65.0
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.8e-49 199.5 135 68.9
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 3.1e-49 198.7 148 63.5
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 4.1e-49 198.4 135 65.9
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 5.4e-49 198.0 141 66.0
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 7.0e-49 197.6 135 67.4
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.6e-48 196.4 133 65.4
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 5.9e-48 194.5 150 61.3
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 5.9e-48 194.5 136 66.2
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 7.7e-48 194.1 138 63.8
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.0e-47 193.7 142 66.2
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.0e-47 193.7 139 67.6
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 1.7e-47 193.0 135 66.7
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 4.0e-44 181.8 143 58.0
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 6.8e-44 181.0 136 62.5
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.0e-43 179.5 149 57.7
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.6e-43 179.1 149 57.7
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 1.4e-41 173.3 134 57.5
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.2e-37 160.2 156 51.3
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 2.8e-37 159.1 133 57.1
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 2.0e-35 152.9 150 53.3
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 9.8e-35 150.6 138 48.6
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 4.9e-34 148.3 101 65.3
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 6.4e-34 147.9 134 52.2
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 7.0e-33 144.4 133 51.9
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.7e-32 142.5 133 51.9
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 4.6e-32 141.7 143 48.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 8.6e-31 137.5 145 49.0
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 4.3e-30 135.2 100 65.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 5.6e-30 134.8 106 64.2
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 1.4e-28 130.2 93 61.3
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 8.9e-28 127.5 104 57.7
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 6.4e-26 121.3 144 46.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 9.2e-25 117.5 136 47.1
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 9.8e-19 97.4 158 38.6
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 4.9e-18 95.1 117 42.7
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 4.9e-18 95.1 81 60.5
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 4.6e-16 88.6 103 45.6
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 2.3e-15 86.3 72 56.9
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.9e-14 83.2 157 35.0


User provided reference genes

Program Settings