Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 2.3e-117 425.6 223 100.0
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 7.2e-79 297.7 218 72.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.2e-75 286.2 220 70.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 7.0e-74 281.2 220 69.5
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.5e-73 278.9 221 71.5
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.3e-72 276.9 219 69.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-71 272.7 225 65.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.3e-71 272.3 219 68.9
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.3e-71 272.3 223 68.2
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 5.6e-71 271.6 225 65.3
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 3.0e-69 265.8 217 64.5
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.5e-68 263.5 222 68.5
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.5e-68 261.2 216 63.0
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-67 260.0 216 63.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.9e-67 259.2 219 66.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 8.3e-67 257.7 216 65.3
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 8.3e-67 257.7 219 63.0
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.1e-66 255.4 216 62.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.6e-65 253.4 223 63.7
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.5e-65 252.3 223 64.6
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.6e-65 251.9 223 64.6
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 5.9e-65 251.5 219 63.0
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.9e-65 251.5 200 67.0
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.8e-65 251.1 223 64.1
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.3e-64 249.6 215 60.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.3e-64 249.6 215 60.9
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 5.0e-64 248.4 219 63.9
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.6e-64 248.1 217 60.4
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.6e-64 248.1 215 61.4
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 6.6e-64 248.1 220 62.7
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 6.6e-64 248.1 219 62.1
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.1e-63 247.3 212 64.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.1e-63 247.3 237 59.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.5e-63 246.1 224 63.4
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.3e-63 245.4 190 68.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 5.6e-63 245.0 214 63.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.6e-62 242.3 253 56.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.7e-62 241.9 220 62.7
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.0e-61 240.7 215 63.3
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.0e-61 240.7 217 64.1
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.8e-61 240.0 225 59.1
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.1e-61 239.2 217 64.1
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 4.0e-61 238.8 221 61.1
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.2e-61 238.4 196 62.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 8.9e-61 237.7 224 61.2
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 8.9e-61 237.7 214 61.7
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 8.9e-61 237.7 209 61.2
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.2e-60 237.3 203 64.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.2e-60 237.3 222 62.2
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.5e-60 236.9 225 58.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 3.4e-60 235.7 220 61.4
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.4e-60 235.3 234 58.5
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.3e-59 233.8 177 72.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.1e-58 230.7 219 59.8
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.9e-58 229.9 272 51.1
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.9e-58 229.9 212 61.8
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 4.1e-58 228.8 211 60.2
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 7.8e-57 224.6 159 71.7
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.7e-56 223.4 154 74.0
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 3.9e-56 222.2 214 59.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 5.0e-56 221.9 218 59.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.0e-56 221.9 154 72.7
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 8.6e-56 221.1 221 58.8
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.5e-55 220.3 189 63.5
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.5e-55 220.3 223 57.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.9e-55 219.9 182 65.9
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 2.5e-55 219.5 171 67.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 2.5e-55 219.5 154 72.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 5.6e-55 218.4 219 57.5
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.2e-54 217.2 175 63.4
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.6e-54 216.9 172 65.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 4.7e-54 215.3 223 57.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.7e-54 215.3 169 66.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 6.2e-54 214.9 217 58.5
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 6.2e-54 214.9 194 60.8
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 8.1e-54 214.5 215 55.8
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.1e-53 212.6 217 56.2
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 4.0e-53 212.2 222 57.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 5.2e-53 211.8 181 64.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 6.8e-53 211.5 221 55.7
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 1.5e-52 210.3 194 59.8
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.6e-52 209.5 157 70.7
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 5.8e-52 208.4 155 71.0
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 7.5e-52 208.0 222 56.8
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.3e-51 207.2 163 67.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.7e-51 206.8 154 71.4
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 4.9e-51 205.3 212 58.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 4.9e-51 205.3 154 68.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-50 204.1 224 56.2
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.1e-50 204.1 217 54.8
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.4e-50 203.0 215 54.9
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 5.4e-50 201.8 224 55.4
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 9.2e-50 201.1 222 54.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.7e-49 199.5 218 55.0
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.7e-49 199.5 181 61.9
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 3.5e-49 199.1 166 63.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.5e-47 193.0 223 54.3
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 4.3e-47 192.2 221 54.8
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 4.3e-47 192.2 223 54.7
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 9.5e-47 191.0 223 54.3
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.2e-46 190.7 222 55.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.2e-46 190.7 222 55.0
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.1e-46 189.9 225 54.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 4.7e-46 188.7 215 50.2
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 6.2e-46 188.3 157 63.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 1.8e-45 186.8 146 65.1
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 3.1e-45 186.0 223 52.9
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.5e-44 183.7 145 66.2
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 7.6e-44 181.4 170 55.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 6.4e-43 178.3 173 62.4
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.4e-42 176.4 189 55.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.1e-42 174.9 215 47.4
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 7.1e-42 174.9 134 69.4
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.2e-41 174.1 161 59.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.6e-41 173.7 129 70.5
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.6e-38 163.7 166 59.6
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 4.7e-38 162.2 145 61.4
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.8e-37 160.2 141 62.4
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 8.4e-35 151.4 175 52.0
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.9e-34 150.2 225 45.8
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 3.5e-33 146.0 149 59.1
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.8e-30 136.3 113 69.0
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.6e-30 136.0 150 50.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 9.0e-29 131.3 178 45.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.2e-27 126.7 152 52.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.9e-27 126.3 152 54.6
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.9e-26 123.6 88 70.5
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 2.4e-26 123.2 145 49.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 7.1e-26 121.7 158 45.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 9.3e-26 121.3 87 74.7
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.6e-25 120.6 95 71.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.8e-24 117.1 78 78.2
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.3e-23 112.8 169 43.2
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 5.6e-23 112.1 169 45.6
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 9.6e-23 111.3 147 44.2
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 4.8e-22 109.0 104 60.6
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 6.2e-22 108.6 123 52.0
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 9.0e-21 104.8 163 45.4
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.5e-20 102.4 200 41.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.7e-19 100.5 117 54.7
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.9e-19 99.8 103 55.3
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 8.1e-14 81.6 115 52.2
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-13 80.9 136 36.8
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 2.4e-13 80.1 130 37.7
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 4.0e-13 79.3 88 47.7
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.2e-11 73.6 50 72.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.9e-11 72.4 84 54.8
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-10 69.7 71 50.7
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.5e-07 60.8 38 73.7
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 9.6e-07 58.2 150 33.3
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 2.1e-06 57.0 75 46.7


User provided reference genes

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