Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 3.6e-118 428.3 226 100.0
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 2.1e-86 322.8 222 74.8
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.6e-86 322.0 199 80.4
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.1e-85 320.5 198 81.3
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 6.8e-85 317.8 194 81.4
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 8.9e-85 317.4 190 82.6
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.2e-84 317.0 194 81.4
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.4e-84 315.5 196 79.6
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 4.4e-84 315.1 191 82.2
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 5.8e-84 314.7 196 80.1
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 9.9e-84 313.9 197 78.7
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.7e-83 313.2 189 80.4
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.2e-83 312.8 221 73.8
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.9e-83 311.6 192 80.7
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.9e-83 311.6 192 80.7
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.9e-83 311.6 194 81.4
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 8.4e-83 310.8 192 79.2
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.2e-82 308.9 193 78.8
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 5.4e-82 308.1 223 70.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 7.1e-82 307.8 190 80.5
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.2e-81 307.0 193 77.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 1.6e-81 306.6 193 78.2
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 3.5e-81 305.4 218 68.3
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.0e-80 303.9 189 78.3
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.7e-80 303.1 189 77.8
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.5e-79 299.3 223 69.1
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 2.5e-79 299.3 181 81.8
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.5e-79 299.3 200 74.0
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.3e-79 298.9 193 78.2
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 3.3e-79 298.9 200 77.0
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 4.3e-79 298.5 192 75.5
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.3e-79 297.7 193 77.7
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 1.3e-78 297.0 189 77.2
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 1.3e-78 297.0 189 77.2
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.3e-78 297.0 197 73.6
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 2.1e-78 296.2 228 68.4
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 3.6e-78 295.4 175 82.3
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 3.6e-78 295.4 186 77.4
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 6.2e-78 294.7 198 73.7
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.1e-77 293.9 191 73.3
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.5e-76 290.0 188 73.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 5.8e-76 288.1 225 66.7
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.7e-75 286.6 187 73.3
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.7e-75 286.6 188 77.1
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.2e-75 286.2 195 73.8
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 4.9e-75 285.0 186 73.1
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 4.9e-75 285.0 198 72.7
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.4e-74 283.5 195 74.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.4e-74 283.5 221 67.0
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 3.2e-74 282.3 181 75.1
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 7.1e-74 281.2 187 72.2
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 7.1e-74 281.2 193 72.5
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 7.1e-74 281.2 190 73.7
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 9.3e-74 280.8 188 73.9
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 9.3e-74 280.8 221 65.2
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.2e-73 280.4 193 72.5
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.1e-73 279.6 184 75.5
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 2.7e-73 279.3 197 71.1
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 3.5e-73 278.9 188 73.4
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 3.5e-73 278.9 188 73.4
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 3.5e-73 278.9 225 64.4
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.6e-73 278.5 200 70.0
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 7.9e-73 277.7 205 69.8
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 7.9e-73 277.7 198 70.2
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.3e-72 276.2 189 70.9
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 3.9e-72 275.4 188 72.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 3.9e-72 275.4 188 72.9
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.9e-72 275.4 231 64.9
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 1.5e-71 273.5 191 68.1
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.3e-71 272.3 198 70.7
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 4.3e-71 271.9 197 68.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.6e-70 270.0 176 75.0
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.6e-70 270.0 192 69.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 6.2e-70 268.1 182 70.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 1.1e-69 267.3 204 66.2
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 9.0e-69 264.2 142 89.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.2e-68 263.8 184 73.4
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.8e-67 258.8 223 62.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.4e-66 256.1 164 79.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 5.5e-66 255.0 187 68.4
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 7.1e-66 254.6 145 85.5
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 7.1e-66 254.6 196 68.9
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 6.7e-64 248.1 142 85.2
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 7.4e-63 244.6 162 76.5
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 8.1e-62 241.1 187 67.9
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 4.5e-60 235.3 195 67.2
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 7.6e-60 234.6 196 61.2
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.9e-59 232.6 174 65.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 3.2e-58 229.2 174 64.9
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 7.1e-58 228.0 189 61.4
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.5e-55 220.3 161 68.3
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.3e-55 218.8 173 58.4
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.1e-54 216.5 173 57.8
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.5e-52 210.3 165 65.5
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 8.4e-51 204.5 159 66.0
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 7.4e-47 191.4 174 62.6
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.4e-44 182.6 142 69.0
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 5.0e-43 178.7 130 71.5
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-39 166.4 194 48.5
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.1e-37 161.0 123 66.7
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.0e-35 154.5 180 46.7
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.1e-34 151.0 138 57.2
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 2.1e-33 146.7 85 77.6
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.1e-33 146.7 195 43.6
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 7.9e-33 144.8 85 76.5
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 7.0e-29 131.7 234 38.5
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 9.1e-29 131.3 171 43.9
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 3.0e-24 116.3 177 41.8
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 8.8e-24 114.8 55 89.1
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 5.3e-21 105.5 93 63.4
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 5.5e-18 95.5 79 63.3
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.1e-17 93.6 82 56.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.1e-17 93.6 81 63.0
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 7.0e-13 78.6 63 61.9
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 2.2e-11 73.6 65 60.0
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 5.0e-11 72.4 34 94.1
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.7e-09 66.6 71 54.9
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.4e-08 64.3 33 84.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.0e-08 62.8 145 31.7
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 6.8e-08 62.0 144 28.5
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.5e-07 60.8 189 27.5
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.0e-07 60.5 145 31.0
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 2.6e-07 60.1 141 27.7
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 3.4e-07 59.7 216 24.5
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 4.4e-07 59.3 57 50.9
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.3e-06 57.8 189 28.0
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.3e-06 57.8 189 25.4
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 1.3e-06 57.8 105 30.5
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.7e-06 57.4 147 27.9
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.7e-06 57.4 146 30.1
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 2.8e-06 56.6 146 27.4
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 4.9e-06 55.8 112 29.5
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 6.3e-06 55.5 146 26.7
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 8.3e-06 55.1 188 27.1
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 8.3e-06 55.1 146 27.4


User provided reference genes

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