Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 3.2e-37 157.9 80 100.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.5e-31 139.0 75 89.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.5e-30 133.7 75 86.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 7.2e-29 130.2 76 80.3
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.1e-28 128.6 76 78.9
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 2.1e-28 128.6 76 80.3
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.1e-28 128.6 76 78.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.7e-28 128.3 75 82.7
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 3.6e-28 127.9 76 78.9
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.6e-28 127.9 73 84.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 4.6e-28 127.5 76 77.6
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 6.1e-28 127.1 73 82.2
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 7.9e-28 126.7 75 80.0
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 7.9e-28 126.7 76 77.6
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 7.9e-28 126.7 75 82.7
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-27 125.9 73 83.6
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 2.3e-27 125.2 75 78.7
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-27 125.2 76 77.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.3e-27 125.2 75 78.7
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.0e-27 124.8 75 78.7
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.9e-27 124.4 76 78.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.9e-27 124.4 73 80.8
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.9e-27 124.4 76 76.3
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.9e-27 124.4 74 81.1
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 6.7e-27 123.6 76 76.3
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 6.7e-27 123.6 76 76.3
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 6.7e-27 123.6 76 76.3
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 6.7e-27 123.6 75 76.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 6.7e-27 123.6 75 78.7
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 8.8e-27 123.2 76 76.3
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 8.8e-27 123.2 76 77.6
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 8.8e-27 123.2 76 77.6
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.1e-26 122.9 75 81.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 76.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 76.3
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 76.3
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 76.3
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.1e-26 122.9 73 79.5
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.1e-26 122.9 73 79.5
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.1e-26 122.9 75 76.0
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 76.3
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.1e-26 122.9 76 77.6
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.5e-26 122.5 73 79.5
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.5e-26 122.5 75 73.3
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.0e-26 122.1 76 76.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.0e-26 122.1 75 74.7
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.5e-26 121.7 74 78.4
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 3.3e-26 121.3 76 75.0
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 4.3e-26 120.9 76 75.0
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-26 120.6 72 77.8
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 5.7e-26 120.6 75 74.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 5.7e-26 120.6 76 73.7
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 5.7e-26 120.6 76 73.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.7e-26 120.6 76 76.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.7e-26 120.6 76 76.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 7.4e-26 120.2 76 73.7
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 9.7e-26 119.8 75 77.3
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 9.7e-26 119.8 76 75.0
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.7e-25 119.0 75 72.0
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.7e-25 119.0 75 76.0
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.2e-25 118.6 75 74.7
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.8e-25 118.2 76 73.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.8e-25 118.2 78 75.6
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.8e-25 118.2 75 73.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 3.7e-25 117.9 74 75.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 4.8e-25 117.5 71 76.1
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.8e-25 117.5 71 77.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 6.3e-25 117.1 70 78.6
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 8.2e-25 116.7 71 77.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.1e-24 116.3 72 75.0
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.4e-24 115.9 76 71.1
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.1e-24 114.8 76 72.4
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 4.1e-24 114.4 72 73.6
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.1e-24 114.4 75 69.3
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.1e-24 114.4 75 72.0
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 4.1e-24 114.4 76 71.1
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 4.1e-24 114.4 76 71.1
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 6.9e-24 113.6 75 69.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 7.7e-23 110.2 76 68.4
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 7.7e-23 110.2 102 57.8
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.3e-22 109.4 67 79.1
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.9e-22 108.2 74 70.3
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 3.8e-22 107.8 75 66.7
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.0e-22 107.5 63 77.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.1e-21 106.3 75 64.0
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.4e-21 105.9 97 55.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.9e-21 105.5 62 79.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.2e-21 104.8 72 68.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 4.2e-21 104.4 72 68.1
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 5.5e-21 104.0 113 52.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 7.2e-21 103.6 72 62.5
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 7.2e-21 103.6 72 62.5
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 7.2e-21 103.6 72 62.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 7.2e-21 103.6 72 62.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.2e-21 103.6 62 77.4
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 9.4e-21 103.2 58 81.0
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.2e-20 102.8 74 64.9
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.1e-20 102.1 82 62.2
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.7e-20 101.7 71 66.2
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 4.7e-20 100.9 71 66.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 7.9e-20 100.1 72 59.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 7.9e-20 100.1 72 59.7
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.4e-19 99.4 70 65.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.8e-19 99.0 74 59.5
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.3e-19 98.6 72 62.5
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.3e-19 98.6 72 62.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.3e-19 98.6 72 62.5
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.0e-19 98.2 72 61.1
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 3.0e-19 98.2 72 59.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.1e-18 96.3 76 57.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-18 96.3 58 74.1
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.3e-18 94.7 72 56.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.8e-17 90.9 74 54.1
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.8e-17 90.9 71 59.2
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.2e-17 90.1 57 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.8e-16 89.0 76 51.3
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.4e-16 88.6 74 51.4
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.4e-16 88.6 75 57.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.3e-16 87.4 74 51.4
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.0e-16 87.0 74 52.7
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.0e-15 85.5 70 55.7
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 4.5e-15 84.3 50 86.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 5.9e-15 84.0 49 85.7
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.7e-14 82.4 75 54.7
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 3.2e-13 78.2 71 49.3
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.1e-12 75.5 54 68.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 3.6e-12 74.7 54 70.4
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.4e-11 72.8 74 47.3
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-10 68.2 67 50.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.7e-09 65.9 77 46.8
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.2e-09 65.5 49 65.3
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 9.1e-08 60.1 30 83.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 7.7e-07 57.0 27 81.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.8e-06 54.7 25 88.0
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 3.8e-06 54.7 26 84.6
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 8.5e-06 53.5 26 80.8


User provided reference genes

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