Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 5.6e-300 1033.5 519 100.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 3.5e-201 705.3 525 69.9
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.7e-171 606.7 521 61.4
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.3e-168 597.0 521 60.7
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 2.3e-168 596.3 521 61.8
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 7.4e-167 591.3 521 59.7
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.8e-166 589.3 523 59.5
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.2e-166 588.2 522 60.7
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 3.1e-165 585.9 521 60.3
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 5.3e-165 585.1 530 58.7
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.5e-164 583.6 521 58.7
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.3e-163 580.5 524 59.9
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 7.4e-159 564.7 528 58.3
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 2.1e-158 563.1 527 59.0
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.4e-154 550.4 530 57.4
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 1.1e-151 540.8 575 53.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.5e-151 539.7 522 56.3
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.6e-150 537.0 527 56.4
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.2e-150 536.6 524 56.7
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.8e-149 533.5 522 56.3
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.3e-147 527.3 523 52.6
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.5e-146 523.1 524 55.3
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.5e-146 521.9 524 55.7
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.5e-143 513.1 523 54.5
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.2e-142 510.0 520 53.8
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.8e-141 506.9 606 51.0
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.5e-140 503.8 484 56.2
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.7e-140 501.5 484 56.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-139 499.2 575 50.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.1e-138 497.7 522 53.1
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 4.2e-138 495.7 520 53.7
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 7.2e-138 495.0 520 53.3
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 6.1e-137 491.9 526 51.1
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.4e-136 490.7 522 51.0
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 3.3e-135 486.1 523 52.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 3.7e-134 482.6 524 51.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.8e-133 480.3 558 48.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.6e-132 476.5 526 50.6
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 4.5e-132 475.7 524 51.3
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 5.0e-131 472.2 519 51.8
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 6.5e-131 471.9 523 50.3
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 6.5e-131 471.9 520 51.9
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.5e-130 469.9 519 52.8
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.4e-130 468.0 493 50.3
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.6e-129 467.2 523 50.3
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 3.0e-128 463.0 523 51.4
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 7.5e-127 458.4 517 49.3
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 2.8e-126 456.4 520 50.0
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 3.7e-126 456.1 524 49.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.7e-126 456.1 461 53.6
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 6.3e-126 455.3 520 49.6
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.8e-125 453.8 524 50.6
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 2.4e-125 453.4 524 49.0
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 3.1e-125 453.0 524 49.0
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 4.1e-125 452.6 516 49.8
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.0e-124 450.3 542 49.1
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 7.7e-124 448.4 521 49.7
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.0e-123 448.0 519 49.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-123 447.6 525 48.6
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 1.7e-123 447.2 523 50.7
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 2.9e-123 446.4 518 49.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 2.9e-123 446.4 518 49.0
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.8e-123 446.0 523 48.8
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 4.2e-122 442.6 514 48.2
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.2e-122 441.8 523 48.4
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.1e-121 440.3 519 48.4
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 4.7e-121 439.1 526 49.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.0e-120 438.0 521 48.8
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 2.3e-120 436.8 524 49.0
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 5.2e-120 435.6 525 48.4
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 8.8e-120 434.9 520 50.0
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.5e-119 434.1 517 48.5
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 5.7e-119 432.2 535 47.1
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 3.7e-118 429.5 518 47.1
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 3.7e-118 429.5 520 48.7
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.1e-117 427.9 533 45.8
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.1e-117 426.4 505 48.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.0e-117 425.2 449 52.8
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 5.9e-116 422.2 522 47.5
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.9e-115 419.9 520 46.2
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.2e-114 416.4 522 46.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 8.0e-113 411.8 523 46.7
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 3.4e-111 406.4 525 45.1
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 7.5e-111 405.2 471 48.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 4.9e-110 402.5 466 49.8
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.8e-109 400.6 479 45.7
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.1e-109 399.4 354 56.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 5.9e-108 395.6 533 42.6
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 8.6e-107 391.7 608 41.9
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.9e-106 390.6 523 45.7
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 4.4e-103 379.4 522 44.4
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.7e-102 376.3 532 40.4
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 3.6e-97 359.8 477 45.7
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.8e-96 357.5 375 51.2
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.9e-94 349.4 534 39.7
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 3.0e-91 340.1 378 46.8
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.4e-85 321.2 452 42.7
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.4e-85 320.5 308 55.2
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 9.2e-77 292.0 381 43.6
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 7.3e-74 282.3 484 36.6
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 9.6e-74 282.0 210 70.0
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 5.3e-64 249.6 319 46.7
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 9.3e-61 238.8 446 37.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.4e-54 216.1 273 46.5
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-53 215.3 286 43.4
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 4.2e-53 213.4 449 31.6
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 7.9e-52 209.1 468 33.1
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 7.9e-52 209.1 197 60.9
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 3.3e-50 203.8 301 39.9
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.2e-49 199.5 308 40.3
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 2.6e-47 194.1 469 31.3
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.3e-46 191.8 309 40.5
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.3e-43 181.8 270 41.5
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.5e-42 178.3 439 31.7
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.1e-40 170.6 145 62.1
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 8.5e-38 162.5 237 43.0
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.2e-33 147.9 126 61.1
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.9e-29 134.8 121 62.8
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.2e-28 132.1 142 50.7
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.4e-24 118.6 129 47.3
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 2.9e-22 110.9 146 45.9
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.8e-16 91.7 95 49.5
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 3.1e-16 90.9 103 46.6
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.7e-14 85.1 127 38.6
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.9e-14 84.3 142 35.9
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.9e-14 84.3 98 41.8
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.7e-12 77.8 108 38.0
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 2.6e-10 71.2 156 30.1
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 3.8e-06 57.4 73 41.1


User provided reference genes

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