Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 0.0e+00 1217.6 608 100.0
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.0e-223 780.4 608 67.3
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.4e-220 770.0 607 65.7
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 7.0e-217 757.7 608 64.8
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.0e-215 753.8 608 65.8
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 4.7e-213 745.0 609 63.2
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 2.4e-209 732.6 608 62.7
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 2.2e-207 726.1 610 63.0
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.7e-205 719.2 608 61.5
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.8e-204 716.5 611 61.4
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.2e-203 713.8 604 62.1
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.8e-202 709.1 628 59.7
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.1e-201 705.3 611 60.9
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.3e-190 668.7 609 60.3
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.1e-189 666.4 578 60.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 7.5e-187 657.9 613 58.2
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.4e-186 654.8 605 57.4
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 2.4e-185 652.9 609 56.0
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 2.3e-183 646.4 607 55.8
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 3.0e-183 646.0 521 65.1
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 9.5e-182 641.0 687 53.1
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 6.2e-181 638.3 608 57.1
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 8.0e-181 637.9 609 56.8
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.4e-180 637.1 657 54.0
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 8.9e-180 634.4 608 56.7
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 1.7e-178 630.2 610 56.2
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 2.4e-177 626.3 608 55.8
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.7e-176 622.9 610 55.9
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 4.6e-176 622.1 612 55.2
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 7.8e-176 621.3 610 53.8
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 3.9e-175 619.0 612 55.1
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 3.9e-175 619.0 612 55.1
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 1.1e-174 617.5 615 55.1
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.5e-174 617.1 614 55.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 3.3e-174 615.9 604 54.1
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 4.3e-174 615.5 604 54.1
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 7.3e-174 614.8 613 55.6
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.2e-173 614.0 611 55.5
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 2.1e-173 613.2 613 56.0
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 3.6e-173 612.5 612 54.7
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 4.7e-173 612.1 626 54.2
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.1e-172 610.9 572 58.6
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 2.0e-171 606.7 612 55.4
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.3e-170 604.0 608 53.6
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.9e-169 600.1 615 53.5
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 3.3e-166 589.3 611 51.2
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.4e-164 583.9 480 64.6
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.3e-162 577.4 623 49.9
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.9e-162 576.2 626 51.1
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 2.4e-161 573.2 630 50.8
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 4.1e-161 572.4 611 51.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 9.2e-161 571.2 622 49.7
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 1.2e-160 570.9 639 48.7
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.2e-157 560.8 626 50.5
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 6.2e-157 558.5 627 49.0
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 2.4e-156 556.6 626 50.0
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 4.4e-155 552.4 620 50.0
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.3e-154 550.8 621 52.7
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 2.4e-153 546.6 625 48.5
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 7.1e-153 545.0 625 49.0
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 2.1e-152 543.5 626 48.1
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 8.7e-151 538.1 630 48.7
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-150 537.3 629 48.5
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 3.1e-148 529.6 715 44.9
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 5.3e-148 528.9 622 48.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.2e-147 527.7 640 47.2
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 5.8e-147 525.4 659 46.1
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 7.6e-147 525.0 626 47.1
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 7.6e-147 525.0 641 47.1
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 3.8e-146 522.7 628 48.6
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 3.5e-144 516.2 639 46.8
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.1e-140 504.6 609 46.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 3.2e-137 493.0 621 45.9
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 5.1e-135 485.7 484 56.0
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.3e-125 454.5 484 53.7
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-121 441.0 394 61.4
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.1e-118 431.4 615 42.6
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 6.9e-116 422.2 394 58.4
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.0e-111 408.3 476 47.3
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 5.1e-111 406.0 654 41.7
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 3.8e-106 389.8 362 54.7
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 7.0e-100 369.0 318 59.4
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 3.6e-96 356.7 277 64.3
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 4.7e-96 356.3 316 60.8
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.2e-94 351.7 318 58.8
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.0e-92 342.4 408 47.3
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.5e-86 324.7 296 59.1
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 7.7e-83 312.4 277 61.4
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 3.7e-77 293.5 276 58.3
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 2.7e-67 260.8 224 61.6
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 5.8e-62 243.0 248 52.0
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 3.6e-56 223.8 649 29.3
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-55 222.2 224 51.8
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 4.0e-55 220.3 321 39.9
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 5.1e-50 203.4 405 36.0
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 2.1e-48 198.0 320 40.3
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 2.4e-44 184.5 584 29.1
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 1.6e-40 171.8 266 40.6
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 5.3e-39 166.8 357 33.6
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.3e-33 147.1 170 55.3
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.4e-31 142.1 150 52.7
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 2.4e-31 141.4 365 29.9
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.3e-29 135.6 149 47.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.2e-29 134.8 122 54.1
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.2e-29 134.8 119 54.6
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 9.3e-28 129.4 150 48.7
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 6.0e-27 126.7 245 38.0
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.0e-26 125.9 146 46.6
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.5e-25 122.1 101 56.4
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 4.3e-25 120.6 159 40.9
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 1.3e-24 119.0 117 44.4
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.7e-24 117.5 122 50.8
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 2.4e-23 114.8 113 43.4
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 3.2e-20 104.4 123 48.8
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 3.0e-18 97.8 347 27.7
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.9e-17 95.1 126 41.3
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 4.3e-17 94.0 586 24.7
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 2.0e-14 85.1 196 31.1
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 7.6e-14 83.2 92 46.7
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 2.5e-09 68.2 81 46.9
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 2.5e-09 68.2 92 47.8
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 3.7e-08 64.3 440 23.4
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 2.0e-06 58.5 56 50.0
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 7.7e-06 56.6 54 50.0


User provided reference genes

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