Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 9.8e-228 793.1 397 100.0
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 6.2e-190 667.5 401 82.3
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 8.1e-190 667.2 397 81.9
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-189 666.8 402 82.3
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 5.2e-189 664.5 402 81.3
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 5.2e-189 664.5 402 81.3
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.9e-187 658.7 397 81.1
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 5.4e-186 654.4 401 78.1
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 9.2e-186 653.7 401 79.8
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.2e-185 653.3 401 78.6
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.2e-185 653.3 401 77.8
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.5e-185 651.7 401 80.0
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 7.8e-185 650.6 401 77.6
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-184 649.8 401 80.3
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 2.3e-184 649.0 401 79.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.0e-184 648.7 401 78.8
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.9e-184 648.3 401 79.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 6.6e-184 647.5 401 78.3
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 3.3e-183 645.2 398 78.9
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 5.6e-183 644.4 397 79.1
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 7.3e-183 644.0 403 77.9
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 7.3e-183 644.0 397 80.4
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 7.3e-183 644.0 401 79.1
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 9.6e-183 643.7 401 76.8
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 78.8
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.6e-182 642.9 402 79.1
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 78.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 4.7e-182 641.3 393 81.2
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 6.2e-182 641.0 406 78.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 6.2e-182 641.0 398 78.9
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 8.1e-182 640.6 401 77.1
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 8.1e-182 640.6 425 74.6
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.1e-181 638.6 399 79.2
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.2e-180 636.7 399 78.9
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.5e-180 636.3 398 76.9
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.6e-180 635.6 395 78.0
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 4.4e-180 634.8 401 78.6
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 7.6e-180 634.0 401 78.3
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 2.2e-179 632.5 401 79.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.9e-179 632.1 401 77.6
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 6.4e-179 630.9 397 76.3
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.4e-178 629.8 398 76.9
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.4e-178 629.0 401 77.6
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-178 627.9 402 77.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-178 627.9 402 77.6
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.2e-177 626.7 398 76.9
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.2e-177 626.7 397 76.6
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.6e-177 626.3 399 76.9
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 6.0e-177 624.4 400 75.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 7.8e-177 624.0 362 84.3
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.3e-176 623.2 397 77.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 2.3e-176 622.5 401 75.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.0e-176 622.1 397 75.6
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.0e-176 622.1 401 77.1
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 5.1e-176 621.3 402 76.6
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 6.6e-176 620.9 397 76.6
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.1e-175 620.2 390 81.0
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.9e-175 619.4 398 75.1
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.5e-175 619.0 396 77.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.1e-174 615.9 400 76.0
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 3.1e-173 612.1 400 75.2
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 3.1e-173 612.1 420 71.7
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.0e-173 611.7 404 75.0
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.3e-173 611.3 392 75.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.6e-172 609.0 411 73.7
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 7.6e-172 607.4 411 74.0
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.7e-171 606.3 433 70.7
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 2.2e-171 605.9 394 76.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 4.9e-171 604.7 399 74.7
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.9e-171 604.7 404 72.8
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 8.4e-171 604.0 404 73.3
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 3.2e-170 602.1 404 73.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 5.4e-170 601.3 400 73.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.7e-169 599.0 403 73.2
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 3.5e-169 598.6 404 72.8
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.5e-169 598.6 400 73.5
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.5e-169 598.6 400 73.2
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 4.6e-169 598.2 390 74.6
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 7.9e-169 597.4 386 75.1
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.3e-168 596.7 403 73.0
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-168 596.3 401 73.1
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.3e-168 595.9 380 75.3
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.0e-168 595.5 404 72.3
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-168 595.1 400 73.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.9e-168 595.1 386 74.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.9e-168 595.1 400 73.2
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 6.7e-168 594.3 400 73.0
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 6.7e-168 594.3 401 73.6
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 8.7e-168 594.0 400 72.8
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 3.3e-167 592.0 399 72.7
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 4.3e-167 591.7 404 71.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 4.3e-167 591.7 400 73.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 5.6e-167 591.3 400 72.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 9.6e-167 590.5 399 72.4
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.6e-166 589.7 399 71.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.6e-166 589.7 406 71.9
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 2.1e-166 589.3 380 74.5
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 2.1e-166 589.3 399 72.4
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.8e-165 586.3 367 77.9
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.8e-165 586.3 392 74.0
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 4.0e-165 585.1 400 71.5
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.8e-163 578.6 554 57.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 6.4e-163 577.8 497 60.2
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 4.2e-162 575.1 396 71.2
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 7.9e-161 570.9 415 69.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.6e-158 563.1 362 75.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.1e-158 562.8 453 66.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.1e-157 560.5 444 64.6
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-156 555.4 400 69.5
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.8e-156 554.7 443 64.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 8.4e-155 550.8 399 68.7
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.4e-149 533.5 352 74.7
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.4e-140 502.3 328 78.4
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 5.9e-140 501.5 311 75.9
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 7.2e-138 494.6 292 80.1
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 4.5e-132 475.3 317 75.7
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 8.5e-131 471.1 308 76.3
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 4.4e-119 432.2 390 57.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.0e-115 421.0 342 60.2
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.3e-115 420.6 362 56.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.7e-115 420.2 344 64.5
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.2e-113 414.1 263 77.9
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 2.0e-111 406.8 344 55.8
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.0e-100 370.2 350 54.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.4e-93 346.7 236 75.4
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 7.1e-85 318.5 226 69.0
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.6e-84 315.8 284 51.4
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 8.1e-81 305.1 334 47.3
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 6.6e-67 258.8 365 40.3
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.4e-61 241.1 351 41.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.3e-59 233.8 228 56.6
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.8e-56 224.2 203 60.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.4e-54 215.7 172 68.0
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.8e-51 207.6 267 47.9
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.3e-43 180.6 98 88.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.1e-32 143.7 81 86.4
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 5.3e-32 142.9 80 83.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.0e-32 142.1 82 82.9
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 9.4e-29 132.1 132 56.1
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 3.6e-20 103.6 105 48.6
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 6.7e-19 99.4 65 69.2
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.1e-16 90.5 63 73.0
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 6.7e-11 72.8 67 55.2
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.5e-07 60.1 42 71.4
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 5.9e-07 59.7 57 59.6
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.7e-06 58.2 37 70.3


User provided reference genes

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