Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 7.0e-153 543.9 268 100.0
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 3.2e-105 385.6 252 75.4
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 7.1e-105 384.4 262 74.0
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.2e-104 383.6 267 73.4
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 2.1e-101 372.9 272 73.2
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 2.8e-101 372.5 275 70.5
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 3.6e-101 372.1 271 72.0
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 6.2e-101 371.3 271 72.7
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 6.2e-101 371.3 261 73.6
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.8e-100 369.8 242 76.9
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.4e-100 369.4 271 71.6
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 1.2e-99 367.1 256 74.2
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 3.4e-99 365.5 252 73.4
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 4.4e-99 365.2 273 71.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 3.8e-98 362.1 285 66.0
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 6.4e-98 361.3 214 80.4
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 3.2e-97 359.0 267 70.8
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 7.1e-97 357.8 210 81.0
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 1.2e-96 357.1 277 68.6
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 1.6e-96 356.7 259 69.5
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 1.6e-96 356.7 260 71.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 2.7e-96 355.9 218 79.4
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 3.5e-96 355.5 260 71.2
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.0e-95 354.0 267 68.9
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.0e-95 354.0 259 68.3
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.3e-95 353.6 271 69.0
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.7e-95 353.2 225 76.9
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.7e-95 353.2 264 70.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 2.3e-95 352.8 221 77.4
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 3.0e-95 352.4 234 75.2
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 6.6e-95 351.3 219 76.3
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 8.7e-95 350.9 260 71.5
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.1e-94 350.5 225 76.4
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 1.5e-94 350.1 256 71.1
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 1.5e-94 350.1 212 79.7
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.9e-94 349.7 270 67.0
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 2.5e-94 349.4 255 71.4
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 4.3e-94 348.6 219 75.8
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 5.6e-94 348.2 220 76.8
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 5.6e-94 348.2 213 78.4
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 7.3e-94 347.8 235 74.5
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 9.6e-94 347.4 219 76.3
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-93 346.7 265 68.7
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 2.1e-93 346.3 219 75.8
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 6.2e-93 344.7 228 73.2
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.4e-92 343.6 272 68.0
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.8e-92 343.2 228 72.8
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 9.0e-92 340.9 231 72.3
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 2.6e-91 339.3 289 65.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 5.8e-91 338.2 213 76.1
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 5.8e-91 338.2 262 67.6
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 5.8e-91 338.2 275 65.5
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 5.8e-91 338.2 254 65.7
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 9.9e-91 337.4 262 67.9
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 9.9e-91 337.4 262 67.9
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 9.9e-91 337.4 237 72.6
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 1.3e-90 337.0 262 66.4
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 1.3e-90 337.0 259 66.8
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 2.9e-90 335.9 262 64.5
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 4.9e-90 335.1 228 71.9
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 4.9e-90 335.1 256 68.4
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 4.2e-89 332.0 261 64.8
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 4.2e-89 332.0 274 65.7
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 4.2e-89 332.0 202 76.7
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 5.4e-89 331.6 254 66.5
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.1e-88 329.7 288 62.5
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 3.0e-87 325.9 229 72.9
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 3.0e-87 325.9 259 64.9
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 5.1e-87 325.1 257 66.5
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.5e-86 322.8 204 77.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.3e-85 320.5 244 70.9
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 6.2e-85 318.2 240 67.1
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.6e-83 312.8 264 64.4
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.3e-82 310.5 180 81.1
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 2.2e-82 309.7 221 68.8
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 6.4e-82 308.1 210 71.9
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 8.4e-82 307.8 218 72.5
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.6e-80 303.5 214 72.4
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.1e-80 303.1 212 70.3
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.3e-79 299.7 272 62.9
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 3.9e-79 298.9 273 61.5
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 6.7e-79 298.1 175 80.6
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.5e-78 297.0 280 59.3
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.5e-78 297.0 224 70.5
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.6e-77 293.5 213 68.1
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 6.2e-77 291.6 263 62.4
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 2.4e-76 289.7 248 63.3
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 2.0e-75 286.6 236 64.8
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 2.6e-75 286.2 262 62.6
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 5.8e-75 285.0 236 65.3
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.3e-71 273.9 168 75.0
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.3e-71 273.1 195 66.7
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 2.5e-70 269.6 157 83.4
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.8e-69 266.2 188 72.9
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 4.8e-69 265.4 209 69.9
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 8.2e-69 264.6 174 73.0
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.1e-68 264.2 353 48.4
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.4e-68 263.1 224 59.8
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 6.5e-66 255.0 191 71.2
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 4.3e-62 242.3 195 57.9
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 5.3e-60 235.3 169 70.4
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 4.2e-57 225.7 205 54.6
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.7e-56 223.0 180 58.9
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 8.8e-55 218.0 206 60.2
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 9.7e-54 214.5 177 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 8.2e-53 211.5 152 65.8
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 5.0e-50 202.2 141 70.2
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 4.2e-49 199.1 179 52.5
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 6.3e-45 185.3 116 75.0
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 3.5e-43 179.5 182 50.5
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 2.1e-40 170.2 252 43.7
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.0e-36 155.2 81 88.9
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.7e-35 151.8 81 87.7
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-32 144.1 76 88.2
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 8.8e-31 138.3 148 56.1
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 1.2e-27 127.9 69 85.5
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.6e-27 127.5 115 56.5
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 8.5e-26 121.7 186 39.8
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.3e-23 113.6 116 40.5
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 5.7e-22 109.0 125 56.0
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-21 107.8 58 84.5
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.1e-17 94.7 124 50.8
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 3.0e-15 86.7 51 78.4
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-13 81.3 64 60.9
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 2.8e-13 80.1 45 77.8
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 3.5e-11 73.2 44 72.7
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.3e-10 71.2 69 52.2


User provided reference genes

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