Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.5e-219 765.8 358 100.0
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 2.5e-214 748.4 358 98.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 3.1e-188 661.8 353 86.4
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 2.2e-186 655.6 353 85.6
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.1e-185 653.3 352 86.6
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 2.4e-185 652.1 353 85.0
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 4.1e-185 651.4 353 85.3
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 4.1e-185 651.4 352 86.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 5.4e-185 651.0 354 85.3
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 5.4e-185 651.0 354 83.3
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.2e-184 649.8 352 84.4
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.1e-184 649.0 354 84.2
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 6.0e-184 647.5 354 84.2
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 1.3e-183 646.4 354 83.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.9e-183 644.8 354 84.2
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 6.6e-183 644.0 353 84.1
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 3.3e-182 641.7 352 84.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.6e-181 639.4 351 83.8
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 2.1e-181 639.0 351 83.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 2.1e-181 639.0 353 84.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 2.8e-181 638.6 351 83.5
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 2.8e-181 638.6 355 82.3
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 4.7e-181 637.9 356 81.5
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 6.2e-181 637.5 354 82.5
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 8.1e-181 637.1 367 81.2
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.1e-180 636.7 351 83.2
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.4e-180 636.3 355 82.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.8e-180 636.0 352 83.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 5.2e-180 634.4 346 84.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 5.2e-180 634.4 353 82.7
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.9e-180 633.6 356 80.9
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 8.9e-180 633.6 351 82.9
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 8.9e-180 633.6 353 81.6
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.0e-179 632.5 351 83.2
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.0e-179 632.5 352 83.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 2.0e-179 632.5 351 83.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 3.4e-179 631.7 353 82.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 4.4e-179 631.3 353 82.7
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.8e-179 630.9 354 83.1
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.6e-179 630.6 376 77.4
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.3e-178 629.8 354 83.1
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.7e-178 629.4 351 82.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.2e-178 629.0 376 77.1
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 3.8e-178 628.2 351 81.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.9e-178 627.9 353 81.9
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.9e-178 627.9 354 82.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.9e-177 625.9 351 82.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.9e-177 625.9 352 82.4
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.9e-177 625.9 351 83.8
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.9e-177 625.9 351 81.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.1e-177 624.8 352 82.1
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 4.1e-177 624.8 353 81.6
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 7.1e-177 624.0 353 79.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 7.1e-177 624.0 355 81.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.6e-176 622.9 351 81.5
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.6e-176 622.9 352 82.4
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.1e-176 622.5 351 82.3
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.1e-176 622.5 353 80.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.1e-176 622.5 353 81.6
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 3.5e-176 621.7 351 82.1
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 6.0e-176 620.9 352 80.7
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.0e-175 620.2 348 81.6
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.3e-175 619.8 348 82.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.3e-175 619.8 353 78.8
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.7e-175 619.4 353 78.5
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.7e-175 619.4 353 78.5
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.7e-175 619.4 353 78.5
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 1.7e-175 619.4 353 78.5
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.3e-175 619.0 353 78.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 2.3e-175 619.0 352 80.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 3.9e-175 618.2 353 80.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 6.6e-175 617.5 351 81.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 8.6e-175 617.1 354 81.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.5e-174 616.3 375 74.7
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.9e-174 615.9 353 78.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-174 615.9 387 74.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.1e-173 612.5 352 78.7
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 3.6e-173 611.7 351 80.9
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 4.7e-173 611.3 352 78.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.7e-173 611.3 354 78.0
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.8e-172 609.4 351 77.8
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.4e-172 609.0 354 77.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.4e-172 609.0 354 77.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.4e-172 609.0 352 78.1
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.2e-171 606.7 353 79.9
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.5e-171 606.3 352 77.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 7.6e-171 604.0 376 75.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 3.8e-170 601.7 352 79.0
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.0e-167 593.6 342 77.5
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.1e-167 591.3 352 76.7
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 9.6e-166 587.0 353 77.6
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.3e-165 586.6 355 77.7
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 5.8e-163 577.8 351 74.9
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 6.4e-162 574.3 351 76.4
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.9e-158 562.8 352 75.6
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.6e-144 516.5 352 71.3
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.3e-143 512.7 310 75.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.9e-142 509.6 295 78.6
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.5e-137 492.7 295 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 8.7e-135 484.2 350 62.9
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.2e-133 479.6 357 61.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.2e-130 469.5 350 65.7
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.5e-129 466.1 352 66.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 7.4e-126 454.5 261 80.1
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.5e-122 441.4 351 63.2
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.5e-122 441.4 351 63.2
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.7e-118 428.3 355 55.2
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.8e-116 423.3 235 83.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 9.1e-116 421.0 361 56.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.1e-113 414.1 352 59.9
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.4e-103 380.6 304 59.5
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 3.1e-79 299.7 143 93.7
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.8e-72 276.6 178 72.5
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.6e-49 199.1 135 68.9
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 3.8e-45 186.4 105 80.0
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 5.4e-44 182.6 124 68.5
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 7.4e-41 172.2 83 89.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.1e-35 154.1 103 74.8
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.6e-33 145.2 127 53.5
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 3.2e-28 130.2 211 36.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 4.6e-27 126.3 66 84.8
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.4e-23 114.0 82 70.7
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.2e-22 111.7 306 27.1
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.5e-22 111.3 260 28.5
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 3.8e-21 106.7 51 88.2
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 6.5e-21 105.9 205 30.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.2e-19 101.7 48 93.8
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 3.6e-19 100.1 208 27.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.1e-18 96.3 138 40.6
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 3.4e-14 83.6 64 60.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 4.5e-14 83.2 47 78.7
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.4e-07 60.8 261 24.9
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.1e-07 60.5 261 24.9


User provided reference genes

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