Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 5.7e-129 464.2 219 100.0
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.9e-108 396.0 202 92.6
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 5.4e-95 351.3 202 80.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 7.1e-95 350.9 202 80.2
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 7.1e-95 350.9 202 79.7
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 2.1e-94 349.4 202 78.2
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 6.0e-94 347.8 202 79.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 6.0e-94 347.8 202 79.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 7.8e-94 347.4 190 82.1
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.6e-93 344.0 202 77.7
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 1.1e-92 343.6 202 77.2
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-92 343.2 195 79.0
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-92 343.2 195 79.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 2.5e-92 342.4 201 76.6
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 2.5e-92 342.4 201 76.6
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 3.3e-92 342.0 202 78.2
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 3.3e-92 342.0 202 78.7
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 3.3e-92 342.0 202 77.7
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.3e-92 342.0 208 76.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 4.3e-92 341.7 190 80.5
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 5.6e-92 341.3 202 77.2
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 5.6e-92 341.3 201 77.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 7.3e-92 340.9 201 77.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 7.3e-92 340.9 202 77.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 9.6e-92 340.5 190 80.5
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 9.6e-92 340.5 202 78.2
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 9.6e-92 340.5 202 78.2
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 9.6e-92 340.5 202 77.2
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.2e-91 340.1 203 78.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.6e-91 339.7 202 77.2
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 3.6e-91 338.6 202 76.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 6.2e-91 337.8 228 70.6
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.1e-90 337.0 202 76.7
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.1e-90 337.0 202 78.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.4e-90 336.7 203 76.8
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.4e-90 336.7 202 75.2
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.8e-90 336.3 202 76.7
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.4e-90 335.9 202 74.3
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 2.4e-90 335.9 190 79.5
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 3.1e-90 335.5 202 78.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 4.0e-90 335.1 202 76.2
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 4.0e-90 335.1 202 76.2
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 6.8e-90 334.3 202 75.7
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 6.8e-90 334.3 202 75.7
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 6.8e-90 334.3 202 76.7
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.2e-89 333.6 202 76.7
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.2e-89 333.6 202 76.2
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 2.0e-89 332.8 202 75.7
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.4e-89 332.0 202 73.8
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 7.6e-89 330.9 190 78.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 9.9e-89 330.5 202 75.7
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.7e-88 329.7 202 74.8
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.9e-88 328.9 212 73.6
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 3.8e-88 328.6 202 75.7
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.9e-88 328.2 202 75.2
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.9e-88 328.2 202 75.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 6.4e-88 327.8 202 75.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.4e-87 326.6 202 74.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.4e-87 326.6 202 76.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.4e-87 325.9 202 74.8
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 3.2e-87 325.5 202 74.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 3.2e-87 325.5 193 75.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 4.2e-87 325.1 202 74.8
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 9.3e-87 323.9 202 74.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.6e-86 323.2 202 74.3
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.7e-86 322.4 202 73.8
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 3.5e-86 322.0 202 74.3
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 3.5e-86 322.0 202 74.3
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 3.5e-86 322.0 202 74.3
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 3.5e-86 322.0 202 74.3
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 4.6e-86 321.6 202 73.8
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 3.0e-85 318.9 202 73.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.9e-85 318.5 202 73.8
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.1e-85 318.2 202 71.8
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 1.1e-84 317.0 202 72.8
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 2.5e-84 315.8 202 73.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 9.6e-84 313.9 229 66.8
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.6e-83 313.2 230 66.1
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.5e-81 306.6 164 82.3
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 5.8e-81 304.7 175 77.7
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.2e-80 302.8 202 67.3
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.9e-80 302.4 174 81.0
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.9e-80 301.6 203 66.0
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 6.4e-80 301.2 175 77.7
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 4.2e-79 298.5 266 56.4
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 4.6e-78 295.0 174 77.6
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.6e-78 295.0 175 78.3
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.9e-78 294.3 179 76.5
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.9e-78 294.3 179 76.5
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.0e-77 293.9 280 54.3
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.2e-71 272.3 228 59.2
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.3e-67 260.4 193 60.6
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.0e-66 254.2 202 61.4
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 3.4e-65 252.3 205 57.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 3.4e-65 252.3 202 62.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 7.6e-65 251.1 202 60.9
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.7e-64 250.0 153 73.9
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.2e-64 249.6 188 58.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.9e-64 248.4 202 60.4
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.1e-63 247.3 200 59.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 4.2e-63 245.4 191 59.2
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 4.3e-60 235.3 122 86.1
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.1e-58 230.7 146 73.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.3e-56 223.8 146 75.3
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.8e-51 206.1 151 65.6
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 5.9e-41 171.8 111 73.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.9e-39 166.8 118 66.1
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.2e-39 166.0 111 72.1
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 1.0e-37 161.0 111 68.5
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.4e-37 160.6 111 67.6
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.7e-35 153.7 106 65.1
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.8e-35 152.9 105 65.7
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.4e-34 149.8 138 58.0
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.2e-31 139.4 87 72.4
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.5e-28 128.3 87 67.8
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.5e-28 128.3 87 67.8
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-25 119.8 152 46.1
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-17 94.4 78 59.0
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.5e-17 92.4 56 73.2
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.5e-17 92.4 56 73.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.5e-17 92.4 79 58.2
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.2e-16 90.1 78 56.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.0e-16 89.0 79 54.4
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.7e-14 82.4 73 57.5
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.7e-14 82.4 73 57.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.0e-08 64.7 55 56.4


User provided reference genes

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