Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 7.8e-256 886.7 475 100.0
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.5e-208 728.4 475 82.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.3e-199 699.9 485 76.1
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.9e-196 687.6 484 75.6
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.2e-195 686.8 485 75.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 7.6e-195 684.1 485 74.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.6e-195 684.1 485 75.3
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 5.0e-194 681.4 494 73.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 4.3e-190 668.3 485 73.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.8e-188 662.9 485 73.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.5e-182 643.3 487 69.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 9.7e-182 640.6 486 72.4
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.4e-180 636.0 460 72.0
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.0e-178 630.6 492 68.1
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-178 630.2 489 71.4
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 7.2e-177 624.4 487 70.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.6e-176 623.2 491 68.0
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.1e-176 622.9 486 67.5
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.7e-176 621.7 487 70.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.0e-175 620.5 490 68.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 5.2e-175 618.2 472 71.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 8.8e-175 617.5 460 69.8
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-174 617.1 490 69.4
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-174 617.1 493 68.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.1e-174 617.1 485 67.0
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.0e-174 616.3 492 67.9
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.6e-174 615.9 485 68.5
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.8e-172 609.8 507 65.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.1e-172 609.0 495 67.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 5.3e-172 608.2 502 67.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 7.7e-171 604.4 486 66.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-170 604.0 515 63.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 8.5e-170 600.9 485 65.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.1e-168 594.7 482 63.5
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-167 593.6 485 67.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.5e-166 590.1 486 65.2
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.4e-166 588.6 482 63.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.5e-166 587.8 479 63.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-164 583.6 485 64.5
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.4e-164 583.6 459 69.9
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.9e-161 573.2 485 63.9
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.7e-160 569.3 434 68.7
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.6e-160 568.9 483 62.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.1e-160 568.2 516 60.1
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.3e-159 566.2 486 62.1
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 4.0e-159 565.5 479 62.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-158 563.5 477 62.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.5e-158 563.5 492 62.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.6e-158 562.8 489 62.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.6e-158 562.8 489 62.0
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.4e-158 562.4 485 63.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 4.4e-158 562.0 485 64.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.7e-157 558.9 482 61.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.3e-157 557.8 489 62.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-157 557.8 471 62.8
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.2e-155 553.9 491 61.9
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.0e-154 550.8 491 61.9
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-154 550.8 499 61.1
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-154 550.4 482 64.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-154 550.1 508 59.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.8e-154 548.9 499 61.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.5e-153 546.2 498 60.6
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.2e-153 545.8 485 63.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 3.2e-153 545.8 499 60.5
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.2e-153 545.8 486 64.6
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.5e-153 545.0 499 60.3
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.6e-152 543.5 493 63.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.1e-152 543.1 487 62.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.3e-151 539.7 482 63.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.8e-151 538.1 485 59.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.8e-151 537.7 486 60.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.2e-150 537.3 495 60.0
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-150 537.3 463 62.0
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.0e-150 536.6 483 59.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.4e-150 535.8 490 59.2
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 7.5e-150 534.6 482 60.8
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-149 533.9 512 58.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.9e-149 531.9 489 60.9
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.8e-147 524.6 481 59.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.7e-146 523.5 444 63.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.1e-145 520.8 464 61.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.5e-145 520.4 484 59.5
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.5e-145 520.4 491 59.3
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.9e-145 520.0 518 58.3
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.9e-145 520.0 507 58.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.3e-145 519.2 496 61.1
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 9.5e-145 517.7 488 59.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.5e-145 517.7 490 58.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.2e-144 517.3 462 64.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.1e-144 516.5 475 58.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-144 516.2 475 58.7
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 6.1e-144 515.0 430 66.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-143 513.8 423 63.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.8e-143 513.5 492 58.3
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.3e-143 513.1 477 59.3
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.3e-143 513.1 489 60.5
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 4.0e-143 512.3 405 66.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 5.2e-143 511.9 544 57.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.0e-142 510.0 483 58.2
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-142 509.6 481 58.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.6e-142 509.6 592 50.7
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 9.8e-142 507.7 481 58.6
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-141 507.3 481 58.6
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-140 504.2 485 58.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.1e-140 504.2 507 55.8
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 7.0e-140 501.5 493 59.2
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 5.9e-139 498.4 481 57.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 5.9e-139 498.4 482 58.3
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 7.8e-139 498.0 481 60.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.0e-138 496.1 483 58.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.5e-137 493.8 483 59.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 2.8e-136 489.6 494 56.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-135 487.6 466 56.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.8e-134 481.9 481 58.2
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.8e-134 481.9 460 60.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-133 480.7 533 52.7
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-133 480.3 533 52.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 7.8e-131 471.5 480 57.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.9e-130 469.2 485 54.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 6.6e-130 468.4 492 52.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-129 467.2 454 58.6
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-127 461.1 399 59.1
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.0e-127 459.1 459 55.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.7e-125 452.6 468 57.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.1e-124 448.4 384 60.9
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.0e-122 444.5 465 52.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.3e-117 427.6 479 52.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.3e-113 412.5 498 50.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.8e-109 399.4 487 49.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.8e-109 399.4 477 47.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.1e-104 383.6 450 51.8
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.2e-100 369.4 396 54.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.6e-97 359.0 486 47.9
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.8e-96 356.7 442 48.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.1e-95 354.8 216 78.2
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.5e-94 350.9 216 77.3
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-94 350.5 405 51.6
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.4e-92 343.6 483 47.0
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.2e-91 341.3 450 42.4
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 6.7e-90 335.5 367 47.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.5e-89 333.6 343 57.7
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.1e-88 330.5 411 49.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.0e-82 310.1 349 48.7
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-80 304.3 291 52.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 6.9e-79 298.9 221 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.2e-78 298.1 312 50.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-68 265.0 180 69.4
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 5.7e-57 226.1 316 53.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.7e-57 225.3 156 71.8
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.5e-53 212.2 134 73.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 3.5e-46 190.3 219 50.7
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.0e-45 188.7 272 46.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 9.8e-41 172.2 367 32.7
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 6.1e-35 152.9 244 34.0
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 8.9e-34 149.1 225 44.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.9e-34 149.1 190 39.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 2.0e-33 147.9 95 72.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.3e-26 124.4 76 75.0
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.7e-24 117.1 69 75.4
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 3.9e-21 107.1 56 91.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.6e-19 101.7 114 56.1
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.4e-15 87.8 116 48.3
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.7e-14 84.3 191 28.8
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.4e-10 72.0 43 76.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.1e-10 70.9 78 50.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.4e-09 67.0 94 43.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.5e-09 66.2 114 35.1
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 7.8e-06 56.2 123 32.5


User provided reference genes

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