Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.2e-62 243.0 124 100.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.4e-47 193.0 112 88.4
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.6e-46 188.7 112 84.8
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 5.9e-46 187.6 112 84.8
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 5.9e-46 187.6 112 84.8
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.3e-45 186.4 112 83.9
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 3.8e-45 184.9 112 83.0
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 5.5e-44 181.0 112 83.9
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 3.6e-43 178.3 112 82.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.0e-42 176.8 111 80.2
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.4e-42 176.4 112 81.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.7e-42 174.1 112 79.5
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 8.8e-42 173.7 112 79.5
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-41 172.9 112 80.4
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.5e-41 172.9 112 79.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.5e-41 172.9 112 76.8
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.3e-41 171.8 112 80.4
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 5.7e-41 171.0 112 78.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 5.7e-41 171.0 118 77.1
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 5.7e-41 171.0 122 75.4
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 7.4e-41 170.6 113 79.6
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 7.4e-41 170.6 112 76.8
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 9.7e-41 170.2 112 79.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 9.7e-41 170.2 121 75.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.7e-40 169.5 112 76.8
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.2e-40 169.1 112 77.7
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.2e-40 169.1 118 76.3
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-40 169.1 118 76.3
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-40 169.1 118 76.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.8e-40 168.7 112 77.7
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.8e-40 168.7 112 77.7
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.8e-40 168.7 118 76.3
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 3.7e-40 168.3 111 80.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 3.7e-40 168.3 111 80.2
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 3.7e-40 168.3 112 78.6
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.7e-40 168.3 112 77.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 3.7e-40 168.3 112 79.5
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 4.8e-40 167.9 112 75.9
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.8e-40 167.9 112 78.6
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.3e-40 167.5 112 78.6
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 6.3e-40 167.5 117 76.9
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 8.2e-40 167.2 116 75.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 8.2e-40 167.2 112 76.8
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 8.2e-40 167.2 112 77.7
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.4e-39 166.4 112 77.7
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.4e-39 166.4 112 77.7
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.8e-39 166.0 112 75.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.4e-39 165.6 111 79.3
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.4e-39 165.6 111 79.3
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 2.4e-39 165.6 111 79.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.4e-39 165.6 111 77.5
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 2.4e-39 165.6 110 78.2
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 3.1e-39 165.2 111 75.7
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 3.1e-39 165.2 112 77.7
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 5.3e-39 164.5 110 77.3
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 5.3e-39 164.5 110 77.3
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 6.9e-39 164.1 112 75.0
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 6.9e-39 164.1 112 76.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 6.9e-39 164.1 114 75.4
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 6.9e-39 164.1 112 76.8
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 6.9e-39 164.1 114 75.4
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 9.1e-39 163.7 112 76.8
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 9.1e-39 163.7 112 76.8
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 9.1e-39 163.7 112 75.9
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.6e-38 162.2 112 75.9
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.6e-38 162.2 112 73.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.4e-38 161.8 112 72.3
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 3.4e-38 161.8 114 76.3
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 4.5e-38 161.4 111 76.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 4.5e-38 161.4 112 76.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 4.5e-38 161.4 112 75.0
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.9e-38 161.0 113 72.6
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 5.9e-38 161.0 111 78.4
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 7.7e-38 160.6 112 75.0
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 7.7e-38 160.6 112 75.0
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 7.7e-38 160.6 111 75.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.7e-38 160.6 127 68.5
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.0e-37 160.2 112 75.9
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.0e-37 160.2 112 75.0
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.3e-37 159.8 113 75.2
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.7e-37 159.5 113 74.3
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.2e-37 159.1 113 76.1
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 2.2e-37 159.1 112 75.0
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 2.2e-37 159.1 111 77.5
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.2e-37 159.1 112 74.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.9e-37 158.7 116 74.1
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.5e-37 157.5 135 63.0
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.9e-36 156.0 113 75.2
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 5.5e-36 154.5 112 71.4
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.2e-35 153.3 112 72.3
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.2e-35 153.3 113 74.3
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.2e-35 153.3 128 67.2
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 1.6e-35 152.9 139 62.6
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.7e-35 152.1 112 73.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 3.6e-35 151.8 112 72.3
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.7e-35 151.4 112 72.3
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 6.1e-35 151.0 112 72.3
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 7.9e-35 150.6 112 71.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.4e-34 149.8 113 69.9
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.8e-34 149.4 112 68.8
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 5.1e-34 147.9 126 64.3
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 5.1e-34 147.9 113 70.8
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.5e-33 146.4 115 69.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.5e-33 146.4 112 70.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 9.7e-33 143.7 126 66.7
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.2e-32 142.5 121 64.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.2e-32 142.5 116 65.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.1e-31 138.7 98 75.5
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 4.5e-30 134.8 97 76.3
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 7.7e-30 134.0 97 74.2
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.7e-29 132.9 115 64.3
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 5.0e-29 131.3 115 64.3
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 7.2e-28 127.5 114 63.2
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 8.0e-27 124.0 120 57.5
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.5e-25 119.8 78 78.2
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 1.7e-21 106.3 62 85.5
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 6.1e-19 97.8 85 58.8
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 7.5e-17 90.9 136 44.9
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.3e-16 90.1 122 45.9
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.8e-16 88.2 73 60.3
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 4.1e-15 85.1 118 49.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.0e-15 84.3 48 85.4
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-12 75.9 43 86.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-12 75.9 75 56.0
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.6e-11 72.0 96 46.9
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 4.7e-11 71.6 114 44.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 8.0e-11 70.9 48 77.1
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.4e-10 70.1 51 70.6
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 4.0e-10 68.6 124 41.1
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 4.0e-10 68.6 48 75.0
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-09 66.2 35 91.4
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.7e-09 64.7 97 50.5
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 9.8e-09 63.9 61 60.7
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.4e-07 60.1 101 34.7
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 5.9e-06 54.7 57 56.1


User provided reference genes

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