Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.8e-133 479.2 232 100.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.8e-133 479.2 232 100.0
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.5e-119 433.0 232 89.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.8e-118 428.7 232 86.2
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.1e-117 425.2 232 85.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.0e-115 420.2 232 83.2
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.3e-115 419.9 232 84.5
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.7e-115 419.5 232 84.5
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.9e-115 418.7 232 83.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.9e-114 416.0 230 84.8
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 9.4e-114 413.7 232 81.9
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.2e-113 413.3 232 83.2
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.7e-113 412.1 230 83.5
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 4.7e-113 411.4 232 82.3
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 8.0e-113 410.6 232 81.9
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.3e-112 409.1 230 83.9
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 4.0e-112 408.3 232 81.9
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.2e-112 407.9 232 81.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.2e-112 407.9 232 80.6
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 6.7e-112 407.5 232 80.6
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 1.2e-111 406.8 232 80.6
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.6e-111 405.6 232 79.7
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.6e-111 405.6 232 81.9
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.3e-111 405.2 231 81.8
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 4.4e-111 404.8 230 83.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 5.7e-111 404.4 232 79.7
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 5.7e-111 404.4 232 79.7
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 5.7e-111 404.4 232 79.7
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 7.5e-111 404.1 232 80.6
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 7.5e-111 404.1 232 80.2
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 7.5e-111 404.1 230 82.6
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 7.5e-111 404.1 232 80.2
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 7.5e-111 404.1 230 80.9
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 9.7e-111 403.7 230 80.9
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.3e-110 403.3 230 80.0
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.3e-110 403.3 232 80.2
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 2.8e-110 402.1 230 80.4
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.8e-109 399.4 230 80.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.4e-109 399.1 237 78.9
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 5.3e-109 397.9 230 78.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.6e-108 396.4 231 77.9
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.6e-108 396.4 234 77.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.0e-108 396.0 232 80.2
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.5e-108 395.2 230 79.6
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.0e-107 393.7 232 78.0
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.3e-107 393.3 231 77.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.7e-107 392.9 230 81.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.0e-107 391.3 253 74.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.0e-107 391.3 253 74.3
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.1e-106 390.2 230 77.0
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.9e-106 389.4 230 77.0
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 3.2e-106 388.7 244 74.2
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.6e-105 386.3 230 77.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 8.0e-105 384.0 231 78.4
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 8.0e-105 384.0 231 74.0
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 8.0e-105 384.0 232 75.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 8.0e-105 384.0 231 78.4
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.3e-104 382.5 232 74.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 4.0e-104 381.7 232 73.7
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 4.0e-104 381.7 230 77.4
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.0e-104 381.7 232 72.4
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 5.2e-104 381.3 232 73.3
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 6.8e-104 380.9 232 75.9
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.5e-103 379.8 213 81.2
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.5e-103 377.5 230 77.0
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.3e-102 376.7 230 74.8
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.7e-102 376.3 271 67.2
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.4e-101 373.2 232 74.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.8e-101 372.9 231 73.6
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.8e-101 372.9 234 72.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.4e-101 371.3 231 74.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 3.5e-100 368.6 232 73.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 4.5e-100 368.2 232 76.7
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 5.9e-100 367.9 232 70.7
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.7e-100 367.5 232 71.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.3e-99 366.7 230 75.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.3e-99 365.9 232 72.8
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.9e-99 365.5 233 74.2
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 3.6e-97 358.6 207 81.2
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.8e-96 356.3 209 79.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.2e-95 353.6 232 70.3
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.5e-95 353.2 231 70.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.5e-95 353.2 209 78.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 4.9e-94 348.2 231 69.3
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 4.1e-93 345.1 230 67.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 5.4e-93 344.7 194 81.4
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 7.0e-93 344.4 234 72.6
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 6.6e-91 337.8 231 68.4
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 9.5e-90 334.0 229 69.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.0e-87 326.2 230 70.0
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 9.2e-85 317.4 231 69.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 2.8e-81 305.8 255 62.0
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.2e-78 296.2 231 61.5
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 7.3e-74 281.2 172 75.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 8.1e-73 277.7 220 60.9
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.4e-72 276.9 231 56.3
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 3.7e-70 268.9 151 80.8
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 1.9e-69 266.5 163 72.4
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.1e-69 265.4 169 73.4
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.3e-67 260.4 176 72.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.0e-67 259.2 205 62.0
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.6e-65 252.3 173 63.0
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 4.4e-55 218.8 173 59.5
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 3.1e-48 196.1 262 40.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 4.2e-45 185.7 247 42.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 6.7e-43 178.3 181 52.5
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.0e-39 166.8 153 55.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.7e-36 156.4 112 67.0
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.1e-33 146.7 89 78.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.1e-32 142.9 99 70.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 5.8e-31 138.7 89 68.5
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.5e-29 133.3 98 67.3
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.7e-28 129.8 85 67.1
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.3e-27 127.5 94 63.8
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 6.7e-27 125.2 125 52.0
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.5e-26 124.0 119 53.8
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.4e-24 117.5 178 38.2
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.4e-24 116.7 150 40.0
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.7e-22 110.5 63 79.4
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 7.2e-21 105.1 138 42.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 7.9e-20 101.7 155 41.3
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.7e-19 98.6 57 80.7
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-14 84.7 213 31.5
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 4.7e-12 75.9 116 38.8
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 7.9e-12 75.1 93 45.2
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 6.7e-11 72.0 56 51.8
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-10 70.9 116 38.8
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.6e-10 70.1 120 34.2
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 7.4e-10 68.6 61 54.1
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.7e-09 67.4 50 70.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 8.2e-09 65.1 159 30.8
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.1e-08 64.7 56 58.9
CiPaw.03G054200 Carya illinoinensis HOM05D001287 ORTHO05D001226 3.1e-08 63.2 216 24.1
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 4.1e-08 62.8 50 66.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 4.1e-08 62.8 49 63.3
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 5.3e-08 62.4 50 66.0
Cfa018838 Carpinus fangiana HOM05D001287 ORTHO05D001226 1.5e-07 60.8 216 24.5
MD17G1013500 Malus domestica HOM05D001287 ORTHO05D001226 1.5e-07 60.8 220 25.9
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 1.5e-07 60.8 50 64.0
CANSAT64G2102 Cannabis sativa HOM05D001287 ORTHO05D001226 2.6e-07 60.1 211 25.1
Gohir.A07G227400 Gossypium hirsutum HOM05D001287 ORTHO05D001226 2.6e-07 60.1 210 24.8
Oeu011961.1 Olea europaea HOM05D001287 ORTHO05D001226 2.6e-07 60.1 205 23.9
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.6e-07 60.1 41 63.4
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 2.6e-07 60.1 213 25.4
Potri.017G069600 Populus trichocarpa HOM05D001287 ORTHO05D001226 3.4e-07 59.7 214 24.8
FAN02G1279 Fragaria x ananassa HOM05D001287 ORTHO05D001226 4.5e-07 59.3 224 25.0
GSVIVG01008517001 Vitis vinifera HOM05D001287 ORTHO05D001226 4.5e-07 59.3 209 25.8
Lsat_1_v5_gn_2_94120 Lactuca sativa HOM05D001287 ORTHO05D001226 7.7e-07 58.5 218 23.9
FvH4_6g53220 Fragaria vesca HOM05D001287 ORTHO05D001226 1.0e-06 58.2 212 24.1
FAN14G2453 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.0e-06 58.2 212 24.1
Gohir.D07G234500 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.0e-06 58.2 210 24.3
Gorai.001G270100 Gossypium raimondii HOM05D001287 ORTHO05D001226 1.0e-06 58.2 210 24.3
RcHm_v2.0_Chr2g0175311 Rosa chinensis HOM05D001287 ORTHO05D001226 1.0e-06 58.2 222 24.8
Thecc.04G033900 Theobroma cacao HOM05D001287 ORTHO05D001226 1.0e-06 58.2 214 23.8
vmacro05882 Vaccinium macrocarpon HOM05D001287 ORTHO05D001226 1.0e-06 58.2 207 26.6
Actinidia05912 Actinidia chinensis HOM05D001287 ORTHO05D001226 1.3e-06 57.8 216 24.1
Gohir.A09G035100 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.3e-06 57.8 212 24.1
Gohir.D09G036000 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.3e-06 57.8 212 24.1
MD09G1012900 Malus domestica HOM05D001287 ORTHO05D001226 1.7e-06 57.4 219 24.2
Prupe.3G304300 Prunus persica HOM05D001287 ORTHO05D001226 3.8e-06 56.2 220 24.5
Hund24910 Selenicereus undatus HOM05D001287 ORTHO05D001226 3.8e-06 56.2 208 26.0
CSS0008331 Camellia sinensis var. sinensis HOM05D001287 ORTHO05D001226 5.0e-06 55.8 223 23.8
Gohir.A10G159300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 8.5e-06 55.1 213 23.5
Peaxi162Scf00075g01933 Petunia axillaris HOM05D001287 ORTHO05D001226 8.5e-06 55.1 217 23.0


User provided reference genes

Program Settings