Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 9.3e-81 303.5 157 100.0
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 4.5e-19 98.6 85 60.0
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 5.9e-19 98.2 85 62.4
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 5.0e-18 95.1 77 62.3
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 1.5e-17 93.6 80 63.8
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 3.3e-17 92.4 87 62.1
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 5.5e-17 91.7 80 57.5
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 5.5e-17 91.7 76 63.2
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 7.2e-17 91.3 82 59.8
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.2e-16 90.5 76 63.2
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.2e-16 90.5 85 58.8
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 1.6e-16 90.1 78 62.8
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 2.1e-16 89.7 78 60.3
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 3.6e-16 89.0 81 61.7
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 6.1e-16 88.2 80 61.2
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 1.0e-15 87.4 83 55.4
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 1.8e-15 86.7 86 50.0
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 2.3e-15 86.3 81 54.3
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 2.3e-15 86.3 80 57.5
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 4.0e-15 85.5 80 63.8
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 6.8e-15 84.7 80 55.0
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 6.8e-15 84.7 85 60.0
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 1.2e-14 84.0 80 53.8
Dinv28928 Davidia involucrata HOM05D007785 ORTHO05D008997 2.0e-14 83.2 80 60.0
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 2.0e-14 83.2 80 62.5
Prupe.2G109900 Prunus persica HOM05D007785 ORTHO05D008997 5.7e-14 81.6 92 51.1
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 2.2e-13 79.7 85 52.9
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.2e-13 79.7 85 52.9
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.2e-13 79.7 85 52.9
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 2.2e-13 79.7 85 51.8
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 2.8e-13 79.3 108 46.3
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 2.8e-13 79.3 94 44.7
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 8.3e-13 77.8 85 51.8
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.1e-12 77.4 80 53.8
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 1.4e-12 77.0 85 55.3
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 1.8e-12 76.6 85 51.8
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 3.1e-12 75.9 79 51.9
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 5.4e-12 75.1 85 49.4
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 5.4e-12 75.1 82 51.2
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 7.0e-12 74.7 90 50.0
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 9.2e-12 74.3 80 52.5
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.2e-11 73.9 79 50.6
Potri.003G089100 Populus trichocarpa HOM05D007785 ORTHO05D008997 4.5e-11 72.0 75 49.3
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 7.8e-11 71.2 75 53.3
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 1.7e-10 70.1 80 46.2
Cc08_g02350 Coffea canephora HOM05D007785 ORTHO05D008997 2.3e-10 69.7 71 57.7
Prupe.2G110100 Prunus persica HOM05D007785 ORTHO05D008997 2.3e-10 69.7 66 62.1
Thecc.03G232200 Theobroma cacao HOM05D012518 ORTHO05D008997 2.3e-10 69.7 77 49.4
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 2.9e-10 69.3 77 50.6
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 3.8e-10 68.9 80 51.2
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 3.8e-10 68.9 76 50.0
Oeu024374.1 Olea europaea HOM05D007785 ORTHO05D008997 8.6e-10 67.8 73 49.3
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 1.1e-09 67.4 80 47.5
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 1.1e-09 67.4 88 46.6
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 1.1e-09 67.4 81 50.6
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 1.1e-09 67.4 82 48.8
Gohir.D08G179100 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.1e-09 67.4 65 55.4
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 1.9e-09 66.6 76 48.7
Gohir.A08G158700 Gossypium hirsutum HOM05D012518 ORTHO05D008997 2.5e-09 66.2 59 61.0
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 2.5e-09 66.2 76 50.0
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 3.3e-09 65.9 86 47.7
CSS0022493 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 9.5e-09 64.3 76 50.0
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 9.5e-09 64.3 88 44.3
Gorai.004G187600 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.2e-08 63.9 59 57.6
Gohir.A03G002300 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.6e-08 63.5 80 46.2
Gohir.D03G170000 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.6e-08 63.5 80 46.2
Gorai.003G180300 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.6e-08 63.5 80 46.2
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 1.6e-08 63.5 73 49.3
Ciclev10033202m.g Citrus clementina HOM05D007785 ORTHO05D008997 2.8e-08 62.8 85 43.5
Sed0016926 Sechium edule HOM05D007785 ORTHO05D008997 3.6e-08 62.4 88 45.5
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 4.7e-08 62.0 73 49.3
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 6.1e-08 61.6 78 44.9
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 6.1e-08 61.6 92 45.7
Phvul.003G229200 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 8.0e-08 61.2 73 50.7
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 1.0e-07 60.8 81 44.4
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 1.4e-07 60.5 90 40.0
Glyma.05G113700 Glycine max HOM05D007785 ORTHO05D008997 3.0e-07 59.3 73 47.9
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 3.0e-07 59.3 73 45.2
Glyma.17G153500 Glycine max HOM05D007785 ORTHO05D008997 4.0e-07 58.9 73 47.9
VMungo0251G2587 Vigna mungo HOM05D007785 ORTHO05D008997 1.2e-06 57.4 74 45.9
Glyma.11G042100 Glycine max HOM05D007785 ORTHO05D008997 1.5e-06 57.0 73 46.6
arahy.Tifrunner.gnm1.ann1.TXA0XA Arachis hypogaea HOM05D007785 ORTHO05D008997 2.0e-06 56.6 74 44.6
arahy.Tifrunner.gnm1.ann1.XHE4AQ Arachis hypogaea HOM05D007785 ORTHO05D008997 2.0e-06 56.6 74 44.6
DCAR_029543 Daucus carota HOM05D007785 ORTHO05D008997 2.0e-06 56.6 80 42.5
Hund17152 Selenicereus undatus HOM05D034151 ORTHO05D034346 2.0e-06 56.6 89 40.4
Ca_22059_v3 Cicer arietinum L. HOM05D007785 ORTHO05D008997 2.6e-06 56.2 78 44.9
Hund11261 Selenicereus undatus HOM05D018059 ORTHO05D008997 3.4e-06 55.8 78 43.6
AUR62041587 Chenopodium quinoa HOM05D018059 ORTHO05D008997 4.4e-06 55.5 84 45.2
HanXRQChr16g0520951 Helianthus annuus HOM05D007785 ORTHO05D008997 9.8e-06 54.3 82 39.0


User provided reference genes

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