Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.0e-121 439.1 227 100.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.7e-112 409.5 227 90.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 6.6e-112 407.5 227 90.3
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.3e-111 404.8 227 90.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.3e-111 404.8 228 90.4
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.6e-110 401.7 227 88.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 6.2e-110 401.0 227 89.4
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.8e-109 399.4 227 89.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.3e-109 399.1 227 88.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.3e-109 399.1 228 88.6
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.0e-109 398.3 227 89.9
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 6.8e-109 397.5 227 88.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 6.8e-109 397.5 227 88.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 87.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-108 396.7 226 87.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.0e-108 396.0 227 89.0
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.4e-108 394.8 219 90.4
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 87.7
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.6e-108 394.0 227 87.2
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 9.9e-108 393.7 227 88.1
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 86.8
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 87.2
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 86.3
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.9
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.4e-106 389.0 228 86.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 85.5
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 2.7e-105 385.6 227 85.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 85.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 86.3
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.0e-104 383.6 219 87.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-104 383.6 226 86.3
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.7e-104 382.9 227 83.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 85.0
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 85.9
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.0e-104 382.1 229 84.7
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 84.6
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 86.3
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 5.1e-104 381.3 229 84.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.6e-104 380.9 226 84.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.6
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.5e-103 379.0 226 84.1
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.6
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 82.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.3e-103 378.6 226 85.0
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.6e-103 377.9 222 85.6
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 82.4
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 7.3e-103 377.5 229 85.6
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 83.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 9.6e-103 377.1 226 83.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 86.0
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.1e-102 375.9 226 83.2
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 85.0
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 82.4
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 228 85.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 81.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.8e-102 375.6 228 85.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 222 85.6
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.7e-102 374.8 215 85.6
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 8.1e-102 374.0 222 84.7
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 83.7
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 82.8
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 84.1
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.4e-101 373.2 233 82.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 81.9
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.8e-101 372.9 226 82.3
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.1
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 82.4
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 3.1e-101 372.1 214 86.4
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 82.4
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 83.3
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 228 83.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 6.8e-101 370.9 228 84.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 82.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.0e-100 369.4 228 82.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.6e-100 369.0 218 86.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.6e-100 369.0 207 90.3
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 81.5
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 82.4
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 82.8
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 81.5
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 9.9e-100 367.1 214 85.5
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.3e-99 366.7 225 82.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.2e-99 365.9 222 84.2
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.9e-99 365.5 220 84.1
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 81.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 3.8e-99 365.2 228 82.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 81.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.2e-98 362.1 214 83.2
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.7e-97 359.0 214 84.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.7e-97 359.0 214 85.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 82.7
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.6e-97 358.2 214 84.6
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 6.0e-97 357.8 227 78.4
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 85.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.9e-96 355.1 227 78.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.7e-96 354.0 205 84.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.3e-95 352.1 216 82.4
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.3e-95 351.7 206 85.0
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.3e-95 350.9 215 80.5
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 9.6e-95 350.5 214 82.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 81.3
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.4e-93 346.7 237 75.9
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 258 71.3
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.2e-92 343.6 202 87.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.5e-92 343.2 213 81.7
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.9e-91 339.0 227 75.8
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.8e-91 338.6 214 78.5
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.0e-88 330.5 190 85.3
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-86 323.6 228 73.7
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-86 323.2 195 82.1
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 9.9e-84 313.9 212 74.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.2e-83 312.8 227 73.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 2.9e-83 312.4 191 81.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.1e-82 310.5 195 79.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.2e-81 307.0 181 86.2
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 3.1e-77 292.4 214 68.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.9e-75 285.0 227 69.6
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.2e-74 282.0 229 67.7
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 5.5e-74 281.6 216 68.1
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.2e-73 280.4 164 86.0
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.6e-73 280.0 193 76.7
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.3e-72 276.9 164 82.3
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.9e-71 273.1 216 65.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.1e-69 267.3 160 81.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.3e-69 265.0 197 72.6
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.1e-66 257.3 153 83.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.5e-66 255.0 163 77.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.6e-65 253.4 209 62.7
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 9.7e-63 244.2 154 79.9
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 9.0e-61 237.7 237 53.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.4e-53 213.0 215 51.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.4e-53 213.0 131 79.4
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.4e-52 209.1 196 60.2
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.2e-42 174.9 115 76.5
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.2e-41 174.1 108 81.5
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 3.6e-41 172.6 100 82.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.4e-32 144.1 92 76.1
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-31 140.6 109 68.8
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-30 136.7 87 79.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 4.2e-26 122.5 135 53.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.5e-26 122.1 113 62.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 5.0e-19 99.0 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-18 97.8 51 92.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.2e-16 89.0 97 50.5
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.9e-16 88.2 114 47.4
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.7e-14 82.8 70 65.7
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 7.0e-13 78.6 68 55.9
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.9e-10 70.5 208 28.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.4e-08 64.3 63 57.1


User provided reference genes

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