Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 3.8e-200 701.8 510 100.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 8.4e-115 418.3 525 72.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 6.7e-96 355.5 530 66.8
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.6e-92 343.6 534 59.6
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 6.5e-91 339.0 526 61.2
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 5.5e-90 335.9 513 64.5
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.2e-89 334.7 512 67.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.6e-89 334.3 545 63.7
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 3.6e-89 333.2 523 62.3
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.0e-88 331.6 520 63.7
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 5.1e-88 329.3 540 63.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 5.7e-87 325.9 511 66.5
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 9.7e-87 325.1 516 59.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.3e-86 324.7 515 62.9
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.2e-86 323.9 536 60.3
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.8e-86 322.8 550 59.5
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 8.2e-86 322.0 523 59.1
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.4e-85 321.2 511 66.3
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.8e-85 320.9 524 62.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.8e-85 320.9 538 62.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 5.3e-85 319.3 561 47.2
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 3.4e-84 316.6 520 63.1
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-83 313.9 518 62.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 6.5e-83 312.4 556 62.4
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 8.5e-83 312.0 529 64.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 7.2e-82 308.9 563 60.2
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 4.7e-81 306.2 529 63.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.0e-80 305.1 549 53.7
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 5.1e-80 302.8 426 64.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.0e-79 300.8 540 61.5
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.7e-79 299.3 520 61.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-78 298.1 535 61.5
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.8e-78 297.0 539 58.6
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.8e-78 297.0 539 59.4
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.7e-78 296.6 438 68.5
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 6.3e-78 295.8 526 59.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.1e-77 295.0 479 58.5
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.8e-77 294.3 532 59.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.1e-77 293.5 516 63.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 5.3e-77 292.7 520 55.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.3e-77 292.7 550 60.5
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.2e-76 291.6 510 63.5
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.4e-76 290.0 422 55.5
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.7e-76 288.9 547 59.6
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.7e-75 287.7 548 55.7
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.2e-75 287.3 198 78.3
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.5e-75 285.8 203 75.9
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 6.5e-75 285.8 530 50.4
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.4e-74 284.6 553 55.9
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.4e-74 284.6 536 61.4
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.5e-74 283.9 536 54.1
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.2e-74 283.5 544 59.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 5.5e-74 282.7 437 69.8
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 7.2e-74 282.3 174 82.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.7e-73 280.4 433 63.3
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.6e-73 280.0 441 68.5
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 6.1e-73 279.3 538 51.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.0e-72 278.5 434 69.6
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.0e-72 278.5 189 77.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.4e-72 278.1 539 61.8
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.4e-72 278.1 204 75.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.3e-72 277.3 460 59.3
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.3e-72 277.3 548 56.8
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.9e-72 276.6 542 60.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 5.2e-72 276.2 535 60.7
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 5.2e-72 276.2 550 56.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.1e-71 275.0 550 56.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.5e-71 274.6 542 53.9
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.0e-71 274.2 529 60.7
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-71 273.9 524 58.8
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.4e-71 273.1 181 79.6
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 4.4e-71 273.1 554 57.6
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.7e-70 271.2 442 68.3
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.2e-70 270.8 528 59.3
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.8e-70 270.4 461 61.8
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.8e-70 270.4 601 49.8
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 8.2e-70 268.9 424 60.8
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.4e-69 268.1 156 85.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.8e-69 267.7 507 53.8
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.4e-69 267.3 538 57.6
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.1e-69 266.9 443 69.1
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.1e-69 266.9 445 67.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.1e-69 266.5 495 54.3
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.1e-69 266.5 525 61.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.2e-68 265.0 542 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.6e-68 263.8 201 71.6
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.6e-68 263.8 178 77.5
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 5.9e-68 262.7 523 57.0
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.0e-67 261.9 177 78.5
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.0e-67 261.9 436 68.1
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.3e-67 261.5 536 55.8
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.5e-67 258.8 179 76.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.1e-66 258.5 524 49.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.5e-66 258.1 166 78.9
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.9e-66 257.7 436 68.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.5e-66 257.3 179 76.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 5.5e-66 256.1 458 64.4
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 7.2e-66 255.8 437 58.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.7e-65 253.8 551 55.0
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.6e-65 253.4 510 51.2
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.1e-65 252.7 181 75.1
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 6.1e-65 252.7 418 64.4
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.0e-64 251.9 144 87.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.4e-64 251.5 545 56.7
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.0e-64 250.4 180 73.9
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-64 250.0 438 59.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-64 250.0 170 76.5
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.0e-64 250.0 443 59.1
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 5.2e-64 249.6 523 59.8
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 5.2e-64 249.6 153 83.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 6.7e-64 249.2 153 83.7
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-63 247.7 164 77.4
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 2.0e-63 247.7 431 66.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 5.7e-63 246.1 214 65.9
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.8e-62 243.8 164 76.2
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.8e-61 241.1 438 64.8
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-60 237.3 151 80.1
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-59 235.0 435 53.8
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-59 233.4 166 73.5
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 6.5e-59 232.6 126 89.7
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-58 231.9 434 55.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 3.2e-58 230.3 124 90.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 9.4e-58 228.8 128 87.5
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-57 227.6 433 56.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-57 227.3 124 89.5
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.7e-57 226.5 434 54.8
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-57 226.5 433 54.7
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 6.1e-57 226.1 433 55.7
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.0e-56 225.3 131 86.3
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-56 224.9 123 89.4
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-55 221.9 120 90.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-55 221.9 124 87.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-55 220.3 189 67.7
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 7.5e-55 219.2 120 89.2
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 9.8e-55 218.8 184 67.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-55 218.8 190 65.3
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-55 218.8 123 87.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.7e-54 216.9 150 76.0
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-53 215.3 180 68.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-52 210.3 224 58.5
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.0e-51 206.5 182 63.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 4.7e-49 199.9 432 36.8
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 4.0e-48 196.8 402 59.5
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 7.5e-47 192.6 133 75.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.4e-45 188.3 169 61.5
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.5e-44 183.3 100 91.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-43 180.3 124 76.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 5.0e-43 179.9 165 60.6
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.4e-40 171.8 137 71.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-40 170.2 123 73.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.0e-39 167.9 106 80.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-37 161.0 94 83.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.3e-35 155.2 160 55.6
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.5e-34 151.0 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.8e-32 144.8 100 68.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.4e-31 140.2 74 93.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 4.9e-30 136.7 75 88.0
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.2e-29 134.0 75 86.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-28 131.7 103 58.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.5e-28 130.6 176 48.9
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.0e-28 129.8 447 52.8
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-25 122.1 76 77.6
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 3.6e-25 120.6 76 76.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-21 107.5 66 81.8
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-21 107.5 66 81.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.6e-20 105.1 67 77.6
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.5e-20 104.0 206 37.9
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 7.8e-20 102.8 201 38.3
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.1e-19 100.1 52 90.4
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 8.6e-19 99.4 56 89.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.6e-18 96.7 59 81.4
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.4e-16 91.3 56 82.1
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-13 82.4 159 40.3
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 2.4e-08 64.7 101 46.5
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-07 62.4 63 52.4
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-07 61.6 58 56.9


User provided reference genes

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