Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 4.9e-111 404.4 199 100.0
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.0e-89 331.6 189 86.8
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 4.9e-87 324.7 189 87.3
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.6e-85 319.7 189 83.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-85 319.3 189 86.2
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.1e-85 319.3 190 83.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.9e-85 317.4 190 83.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-84 316.2 190 83.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.8e-84 316.2 190 83.7
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.3e-83 312.0 191 83.8
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 7.4e-83 310.8 189 82.5
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.6e-83 310.5 190 82.6
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 4.8e-82 308.1 189 82.5
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.4e-81 306.6 189 81.0
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.4e-81 306.6 189 81.0
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.8e-81 306.2 192 82.3
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.4e-81 305.8 192 82.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 3.1e-81 305.4 189 82.0
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 6.9e-81 304.3 189 81.5
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.6e-80 302.4 190 82.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.0e-79 300.4 185 82.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 4.9e-79 298.1 191 81.2
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 4.9e-79 298.1 189 81.0
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 6.5e-79 297.7 189 81.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 8.4e-79 297.4 190 80.5
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.4e-78 296.6 188 80.3
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.4e-78 296.6 189 78.8
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.4e-78 296.6 191 79.6
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.9e-78 296.2 185 80.5
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.5e-78 295.8 199 77.4
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 5.5e-78 294.7 193 79.8
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.6e-77 293.1 191 80.1
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.1e-77 292.7 198 76.8
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.6e-77 291.6 196 77.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.0e-77 291.2 196 75.5
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 6.0e-77 291.2 191 78.5
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 6.0e-77 291.2 193 78.2
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 7.9e-77 290.8 185 82.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.0e-76 290.4 186 79.6
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.0e-76 290.4 190 79.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-76 290.0 190 76.8
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.8e-76 289.7 190 78.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.3e-76 289.3 190 77.9
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.3e-76 289.3 190 77.4
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 5.1e-76 288.1 190 78.9
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 5.1e-76 288.1 189 77.2
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 8.7e-76 287.3 191 78.5
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.1e-75 287.0 190 79.5
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.5e-75 286.6 191 78.0
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-75 286.6 191 78.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.5e-75 286.6 189 77.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.5e-75 285.8 191 77.5
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.5e-75 285.8 191 77.5
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 3.3e-75 285.4 189 75.1
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.3e-75 285.4 182 80.8
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.3e-75 285.4 186 79.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 5.7e-75 284.6 189 75.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 5.7e-75 284.6 186 80.6
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 5.7e-75 284.6 189 76.7
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 7.4e-75 284.3 188 78.2
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 7.4e-75 284.3 189 78.8
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 7.4e-75 284.3 188 78.2
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 9.6e-75 283.9 187 80.7
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.6e-74 283.1 185 78.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.6e-74 283.1 195 76.4
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.1e-74 282.7 191 77.0
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 4.8e-74 281.6 186 77.4
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-73 280.0 192 76.6
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-73 280.0 192 76.6
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.8e-73 279.6 190 76.8
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.1e-73 278.9 192 76.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.1e-73 278.9 189 77.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 3.1e-73 278.9 189 76.7
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.9e-73 277.7 192 76.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.9e-73 277.7 189 76.7
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.9e-73 277.7 190 76.3
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.0e-73 277.3 187 76.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 1.2e-72 276.9 191 73.8
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.5e-72 276.6 193 76.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.6e-72 275.8 191 77.5
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.6e-72 275.8 194 76.3
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.4e-72 275.4 192 74.5
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.4e-72 275.4 190 74.7
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.5e-72 275.0 185 76.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 4.5e-72 275.0 189 73.5
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 5.9e-72 274.6 189 74.6
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.3e-71 273.5 190 73.7
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.3e-71 273.5 189 76.7
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.8e-71 271.9 189 74.1
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 5.0e-71 271.6 190 75.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 6.5e-71 271.2 193 75.1
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.1e-70 270.4 192 74.5
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.1e-70 270.4 186 75.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.9e-70 269.6 194 75.3
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.9e-70 269.6 194 75.3
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 3.2e-70 268.9 186 75.8
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 7.2e-70 267.7 184 77.7
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.3e-70 267.3 187 74.3
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.1e-69 266.2 189 74.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 2.7e-69 265.8 200 72.5
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.7e-69 265.8 186 75.8
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.6e-69 265.4 197 72.1
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.6e-69 265.0 193 73.6
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.3e-68 262.7 203 71.9
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 8.7e-68 260.8 191 71.2
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.5e-67 260.0 188 72.9
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.9e-67 259.6 189 74.6
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.9e-67 259.6 191 71.7
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.3e-67 258.8 190 72.1
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.3e-67 258.8 192 72.4
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 5.7e-67 258.1 187 74.3
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 9.7e-67 257.3 194 71.1
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.3e-66 256.9 191 72.3
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 4.8e-66 255.0 171 74.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.4e-65 253.4 190 70.0
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.4e-65 252.7 123 96.7
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 4.1e-65 251.9 190 70.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.1e-65 251.9 190 70.0
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 9.1e-65 250.8 194 70.1
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 9.1e-65 250.8 194 70.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.5e-64 250.0 160 80.0
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.0e-64 249.6 195 69.2
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 3.4e-64 248.8 188 69.1
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.3e-63 246.9 197 68.0
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.3e-63 246.9 191 70.2
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.1e-62 243.8 186 73.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.7e-61 239.2 181 71.8
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.6e-61 238.8 162 74.1
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.6e-61 238.8 162 74.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.1e-61 238.0 144 84.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.1e-61 238.0 144 84.0
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 6.1e-61 238.0 188 69.7
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 3.0e-60 235.7 188 67.0
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 3.9e-60 235.3 121 91.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.1e-60 235.0 160 76.2
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.5e-59 233.4 173 72.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.0e-59 233.0 187 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 7.4e-59 231.1 158 75.3
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.8e-58 229.2 142 79.6
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.7e-58 228.8 132 84.1
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.3e-58 228.0 144 77.8
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 8.2e-58 227.6 125 84.8
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.2e-58 227.6 140 80.0
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 6.7e-52 208.0 131 76.3
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 3.7e-50 202.2 182 59.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 4.2e-46 188.7 164 58.5
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.8e-42 176.0 125 76.0
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.8e-42 175.3 186 57.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.1e-41 174.1 191 56.0
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.2e-32 144.1 75 92.0
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.7e-29 132.1 67 91.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 9.5e-22 107.8 109 56.9
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 6.1e-21 105.1 109 57.8
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.0e-20 104.4 109 56.9
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.0e-11 73.6 102 45.1
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 1.6e-08 63.9 96 45.8
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 2.5e-06 56.6 83 47.0


User provided reference genes

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