Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 8.5e-75 283.9 175 100.0
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 8.0e-33 144.4 163 57.7
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 8.3e-30 134.4 134 64.2
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.9e-29 133.3 175 59.4
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.4e-29 132.9 169 58.0
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 3.2e-29 132.5 172 55.8
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 7.0e-29 131.3 166 50.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.7e-27 126.7 168 53.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.0e-27 125.9 169 48.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.9e-27 125.6 161 52.2
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.5e-26 123.6 144 56.2
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.9e-26 123.2 189 50.8
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.3e-26 122.5 170 51.2
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.6e-25 120.2 144 56.2
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.1e-25 119.8 167 48.5
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 2.8e-25 119.4 144 56.9
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-25 119.4 144 56.2
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.6e-25 119.0 177 49.7
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.7e-25 118.6 167 49.7
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 6.2e-25 118.2 171 50.3
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 8.1e-25 117.9 166 51.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 8.1e-25 117.9 164 42.7
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.1e-24 117.5 154 53.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-24 117.5 172 50.0
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.8e-24 116.7 174 51.7
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 3.1e-24 115.9 169 46.2
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.5e-23 113.6 176 54.5
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-23 113.6 160 38.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 3.4e-23 112.5 171 57.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.4e-23 112.5 165 49.1
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 4.4e-23 112.1 159 46.5
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 4.4e-23 112.1 159 46.5
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.5e-23 111.3 172 47.7
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 9.8e-23 110.9 167 44.3
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.7e-22 110.2 220 41.8
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.2e-22 109.8 165 49.1
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.7e-22 109.0 172 47.7
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 4.9e-22 108.6 134 60.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 6.4e-22 108.2 172 47.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 6.4e-22 108.2 163 55.8
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 8.3e-22 107.8 166 44.6
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 8.3e-22 107.8 165 46.1
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 8.3e-22 107.8 144 56.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 8.3e-22 107.8 162 50.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-21 107.5 59 69.5
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.9e-21 106.7 128 53.9
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 2.4e-21 106.3 163 47.2
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 3.2e-21 105.9 176 54.0
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 4.1e-21 105.5 168 56.5
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 4.1e-21 105.5 128 60.2
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.4e-21 105.1 185 45.4
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 5.4e-21 105.1 165 50.9
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 5.4e-21 105.1 168 39.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 5.4e-21 105.1 163 52.1
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 7.1e-21 104.8 185 45.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 9.2e-21 104.4 169 40.2
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.2e-20 104.0 172 47.7
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.2e-20 104.0 134 50.7
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.6e-20 103.6 171 44.4
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.1e-20 103.2 130 54.6
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.7e-20 102.8 165 54.5
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 2.7e-20 102.8 167 47.9
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 3.5e-20 102.4 166 41.0
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 4.6e-20 102.1 166 47.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.0e-20 101.7 174 44.3
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.0e-20 101.7 170 46.5
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.3e-19 100.5 190 42.1
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.3e-19 100.5 163 50.9
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.7e-19 100.1 133 46.6
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-19 100.1 134 50.0
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.3e-19 99.8 170 41.2
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.0e-19 99.4 175 54.9
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 5.1e-19 98.6 169 50.9
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.1e-19 98.6 172 52.3
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.6e-19 97.8 156 51.9
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 147 57.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 151 50.3
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 130 50.8
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 130 50.8
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-18 97.4 130 50.8
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-18 97.4 130 50.8
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-18 97.4 129 47.3
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.5e-18 97.1 165 37.0
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.9e-18 96.7 182 47.8
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.9e-18 96.7 58 67.2
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.3e-18 95.5 174 45.4
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.3e-18 95.5 165 40.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 5.6e-18 95.1 160 45.6
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-17 94.0 175 45.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.2e-17 94.0 207 37.7
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.2e-17 94.0 166 35.5
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.6e-17 93.6 147 36.7
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.8e-17 92.8 59 57.6
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 4.7e-17 92.0 145 51.7
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 4.7e-17 92.0 175 51.4
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.7e-17 92.0 175 38.3
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 4.7e-17 92.0 168 43.5
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 6.2e-17 91.7 163 43.6
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 6.2e-17 91.7 193 44.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 6.2e-17 91.7 183 49.7
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.1e-17 91.3 170 38.2
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 8.1e-17 91.3 170 37.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-16 90.5 168 44.6
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-16 90.5 217 38.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 4.0e-16 89.0 55 63.6
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 4.0e-16 89.0 55 63.6
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 4.0e-16 89.0 55 63.6
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 4.0e-16 89.0 55 63.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.8e-16 88.2 176 42.0
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 6.8e-16 88.2 180 40.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.2e-15 87.4 59 55.9
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.2e-15 87.4 169 33.7
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.5e-15 87.0 57 59.6
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.5e-15 87.0 57 59.6
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.5e-15 87.0 55 61.8
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.5e-15 87.0 194 41.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.6e-15 86.3 57 57.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-15 86.3 57 57.9
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-15 86.3 57 57.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.6e-15 86.3 57 57.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.6e-15 86.3 57 57.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.6e-15 86.3 57 57.9
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.6e-15 86.3 57 57.9
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-15 85.9 57 57.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.3e-14 84.0 55 58.2
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.3e-14 84.0 163 42.3
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 2.2e-14 83.2 222 38.3
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 2.2e-14 83.2 52 59.6
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.2e-14 83.2 176 40.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 6.4e-14 81.6 134 47.8
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.4e-14 81.3 51 56.9
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-13 80.5 59 52.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-13 80.1 226 35.4
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.4e-13 79.7 147 42.2
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-13 79.3 159 40.3
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.1e-13 78.2 221 38.0
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.1e-13 78.2 221 38.0
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.1e-12 76.6 135 45.9
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 3.5e-12 75.9 57 49.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 4.6e-12 75.5 169 43.8
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 6.0e-12 75.1 48 60.4
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.7e-11 73.6 48 60.4
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.7e-11 73.6 54 51.9
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.3e-11 73.2 46 63.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.9e-11 72.4 154 39.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 5.1e-11 72.0 52 51.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 6.6e-11 71.6 48 58.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 6.6e-11 71.6 48 56.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.5e-10 70.5 47 55.3
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 7.3e-10 68.2 48 54.2
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 7.3e-10 68.2 48 54.2
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 2.8e-09 66.2 128 35.9
Os09g0309600 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 7.6e-07 58.2 122 41.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 2.9e-06 56.2 46 39.1


User provided reference genes

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