Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 8.1e-277 956.4 481 100.0
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 8.5e-210 733.8 417 86.3
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 1.3e-205 719.9 420 84.0
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 3.7e-205 718.4 419 84.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 7.7e-203 710.7 420 82.1
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.3e-202 709.9 420 83.1
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.7e-202 709.5 419 83.1
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 1.7e-202 709.5 420 82.1
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 2.9e-202 708.8 420 81.9
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.8e-202 708.4 420 82.6
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 6.5e-202 707.6 417 83.5
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 8.5e-202 707.2 420 81.9
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.1e-201 706.8 420 81.4
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.1e-201 706.8 420 81.7
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 1.9e-201 706.1 420 81.2
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 2.5e-201 705.7 417 83.2
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.5e-201 705.7 417 83.0
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 2.5e-201 705.7 420 82.6
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 7.2e-201 704.1 420 82.1
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 9.4e-201 703.7 419 82.3
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.1e-200 702.6 420 81.9
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 3.6e-200 701.8 420 81.9
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.6e-200 701.8 417 82.7
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 1.8e-199 699.5 420 81.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 3.0e-199 698.7 417 81.8
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 4.0e-199 698.4 417 82.0
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 5.2e-199 698.0 420 81.4
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 6.8e-199 697.6 422 81.0
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-198 696.4 420 80.7
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 2.0e-198 696.0 420 80.2
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.0e-198 696.0 420 80.7
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 3.4e-198 695.3 420 81.4
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.7e-198 694.5 417 80.8
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.7e-198 694.5 420 80.7
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 2.2e-197 692.6 420 80.7
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-197 692.2 419 80.7
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 4.8e-197 691.4 420 81.2
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 6.3e-197 691.0 417 80.8
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 8.3e-197 690.6 417 80.3
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.2e-195 686.8 420 79.8
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 2.0e-195 686.0 420 78.1
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 2.7e-195 685.6 420 78.8
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.3e-194 683.3 420 78.8
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-194 682.6 434 77.9
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 2.3e-194 682.6 420 78.6
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 2.9e-194 682.2 420 78.6
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 3.8e-194 681.8 420 79.3
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 3.8e-194 681.8 471 73.5
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 6.6e-194 681.0 444 76.8
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 8.6e-194 680.6 421 79.1
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.9e-193 679.5 420 78.1
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.9e-193 679.5 417 80.8
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 3.3e-193 678.7 420 78.8
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 4.2e-193 678.3 418 78.5
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 5.5e-193 677.9 420 77.9
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 7.2e-193 677.6 420 78.8
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 9.5e-193 677.2 420 78.6
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 9.5e-193 677.2 417 78.7
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.2e-192 676.8 420 78.6
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.2e-192 676.8 420 78.6
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 1.6e-192 676.4 420 79.0
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.6e-192 676.4 420 79.0
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.6e-192 676.4 420 79.0
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.6e-192 676.4 421 78.4
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.6e-192 676.4 420 79.5
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 1.6e-192 676.4 418 78.7
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-192 675.2 420 79.3
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 3.6e-192 675.2 420 78.3
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 4.7e-192 674.9 419 78.8
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 4.7e-192 674.9 420 78.3
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.7e-192 674.9 422 78.4
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 4.7e-192 674.9 420 78.3
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 6.1e-192 674.5 420 76.9
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 8.0e-192 674.1 420 78.8
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 8.0e-192 674.1 421 78.1
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.2e-191 671.4 420 77.4
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 2.6e-190 669.1 433 76.9
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.6e-190 669.1 420 78.8
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.6e-190 669.1 420 78.8
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.6e-190 669.1 438 75.1
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.6e-190 669.1 420 79.0
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 3.4e-190 668.7 420 78.8
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 5.7e-190 667.9 420 78.8
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 1.7e-189 666.4 466 73.0
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 3.1e-188 662.1 420 76.2
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 5.4e-188 661.4 418 78.5
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.6e-187 659.8 417 76.0
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.9e-187 657.9 420 75.5
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-187 657.5 420 76.7
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 1.7e-186 656.4 420 76.2
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 2.9e-186 655.6 420 76.9
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 1.6e-184 649.8 420 76.0
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.2e-183 644.8 419 75.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.4e-182 642.1 415 75.4
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 7.5e-182 641.0 415 75.9
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 8.3e-181 637.5 417 73.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 3.2e-180 635.6 417 74.1
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 5.4e-180 634.8 419 76.6
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.2e-179 633.6 417 73.9
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 4.6e-179 631.7 417 76.3
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 6.0e-179 631.3 420 74.8
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.3e-178 630.2 343 93.3
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 8.0e-176 620.9 420 73.8
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.1e-175 619.0 420 73.1
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.0e-175 618.6 417 72.7
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 5.2e-175 618.2 420 74.0
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 6.8e-175 617.8 610 55.2
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.8e-175 617.8 424 72.6
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.2e-174 617.1 420 72.1
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 5.8e-174 614.8 428 72.7
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.9e-173 612.5 430 69.8
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.4e-172 610.1 420 71.9
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 6.0e-171 604.7 418 73.2
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.3e-170 603.6 464 67.2
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 3.9e-170 602.1 406 74.6
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.6e-170 601.3 420 69.0
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.5e-169 600.1 417 69.3
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-168 597.0 446 67.7
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-168 596.7 412 71.4
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 8.1e-168 594.3 417 72.2
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 8.1e-168 594.3 417 70.5
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 8.1e-168 594.3 437 69.1
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 4.4e-166 588.6 415 71.1
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-165 586.3 412 71.4
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-164 582.0 420 71.4
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 3.5e-163 578.9 415 69.9
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-162 576.6 360 77.5
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.3e-162 576.2 420 66.9
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.5e-161 572.8 435 66.2
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.6e-161 570.9 358 77.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-156 557.4 351 78.6
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 3.2e-156 555.8 339 80.5
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 6.0e-155 551.6 336 81.5
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-154 548.9 409 66.0
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 8.7e-154 547.7 420 66.2
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.4e-151 540.4 411 63.0
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.4e-149 531.2 426 63.4
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-145 519.6 421 62.9
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 9.6e-145 517.7 311 81.4
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 7.6e-134 481.5 299 79.6
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.2e-132 476.1 425 59.5
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.1e-131 473.4 417 57.1
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 8.7e-130 468.0 286 79.0
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.5e-126 457.2 430 55.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.5e-124 449.9 291 73.9
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.6e-123 447.2 431 55.2
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 6.1e-107 392.1 450 48.7
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.4e-106 391.0 239 80.8
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 8.5e-101 371.7 258 70.5
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.0e-93 348.2 429 45.2
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.8e-87 327.4 473 42.1
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 3.0e-82 310.1 171 87.1
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.2e-81 308.1 198 76.3
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 4.5e-78 296.2 411 42.6
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-69 267.7 168 73.8
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.3e-68 263.5 247 56.7
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 8.3e-64 248.8 134 94.0
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.4e-63 248.1 167 72.5
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.0e-61 241.9 157 75.2
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 1.3e-53 214.9 154 72.1
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.2e-51 206.1 248 50.4
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 1.9e-36 157.9 98 77.6
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.6e-30 138.3 86 76.7
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 2.8e-27 127.5 132 53.8
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 3.6e-27 127.1 82 69.5
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 7.1e-23 112.8 204 34.8
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.3e-23 112.5 72 73.6
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.5e-17 95.1 57 77.2
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 2.6e-17 94.4 192 36.5
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.3e-16 92.0 134 41.8
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 6.5e-16 89.7 95 53.7
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 8.4e-16 89.4 55 74.5
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 6.7e-13 79.7 55 65.5
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 5.7e-12 76.6 235 27.7
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.6e-11 75.1 48 70.8
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 9.0e-10 69.3 94 42.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.5e-09 68.6 70 50.0
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 1.0e-08 65.9 53 58.5
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 6.5e-08 63.2 55 56.4
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 1.1e-07 62.4 44 63.6
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.4e-07 62.0 47 59.6
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 2.7e-06 57.8 30 83.3


User provided reference genes

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