Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 8.9e-254 879.8 444 100.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 3.1e-158 562.4 419 70.9
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 2.4e-150 536.2 419 66.6
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.0e-149 533.1 419 66.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 4.9e-143 511.9 419 65.4
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 8.3e-143 511.1 419 65.6
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.7e-141 506.1 420 62.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.4e-137 493.8 432 62.7
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 3.1e-137 492.7 419 60.6
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 9.8e-136 487.6 419 58.5
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.4e-134 481.9 421 59.6
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.3e-132 476.5 419 60.9
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 8.6e-132 474.6 436 58.9
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 3.1e-129 466.1 431 60.3
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 9.8e-128 461.1 417 60.2
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.9e-127 459.5 419 59.4
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.5e-125 452.6 421 57.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.6e-125 452.2 419 59.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.0e-124 451.1 437 56.5
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.9e-124 449.1 362 64.9
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.9e-124 449.1 418 58.6
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.3e-123 445.7 421 56.8
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 9.5e-123 444.5 422 57.8
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.6e-122 443.7 419 57.0
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-122 443.0 421 56.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.8e-122 443.0 417 58.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.7e-122 442.2 421 56.5
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.1e-122 441.4 419 56.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.4e-121 440.7 428 56.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.4e-118 430.6 429 55.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 4.6e-117 425.6 430 54.9
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.5e-115 419.9 416 57.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.5e-115 419.9 416 57.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 9.6e-115 417.9 442 52.9
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.6e-114 417.2 399 57.4
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.8e-114 416.4 416 56.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 6.2e-114 415.2 416 56.5
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-112 411.0 416 56.5
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.5e-112 410.6 419 54.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.0e-112 410.2 417 54.7
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.4e-112 409.5 416 55.5
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.2e-110 402.9 421 53.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 4.2e-110 402.5 343 62.1
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 4.6e-109 399.1 419 53.5
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 9.0e-105 384.8 441 49.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.5e-104 384.0 424 50.2
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.5e-104 384.0 420 53.8
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.3e-103 380.9 417 52.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.9e-103 379.0 328 62.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.1e-102 377.9 424 49.5
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.4e-102 376.7 417 50.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 2.1e-101 373.6 422 52.1
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 4.6e-101 372.5 424 49.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 4.6e-101 372.5 392 51.8
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.0e-100 371.3 432 47.2
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.9e-100 369.4 420 51.0
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 5.1e-100 369.0 418 51.0
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.5e-99 366.7 433 46.4
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.3e-99 366.3 410 52.4
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 5.6e-99 365.5 436 48.9
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 5.6e-99 365.5 416 50.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-97 361.3 434 47.5
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.1e-97 361.3 391 50.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.0e-96 357.1 419 49.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 5.8e-96 355.5 417 50.8
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.1e-94 351.3 421 48.7
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.1e-94 351.3 421 48.7
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.1e-94 351.3 433 46.2
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.4e-94 350.9 418 51.2
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 9.3e-94 348.2 420 49.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.1e-93 347.1 426 47.9
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.1e-93 347.1 445 44.5
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.7e-93 346.7 421 47.5
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 7.9e-93 345.1 436 46.1
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.8e-92 344.0 437 44.6
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-92 343.6 427 49.2
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.9e-92 342.8 421 46.6
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 5.1e-92 342.4 437 46.7
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.3e-91 339.7 418 48.8
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.3e-91 339.7 431 44.1
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.3e-91 339.3 421 48.9
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 7.4e-91 338.6 434 50.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.8e-90 336.7 422 48.1
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 4.8e-90 335.9 429 47.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 6.2e-90 335.5 424 46.9
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.1e-89 334.7 433 43.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.8e-89 334.0 424 50.9
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.0e-89 332.8 316 56.3
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.3e-89 332.4 422 46.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 6.5e-87 325.5 416 45.9
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.5e-87 325.5 418 45.9
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.1e-86 324.7 420 45.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.9e-86 323.9 421 44.4
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 5.5e-86 322.4 422 44.1
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.5e-86 322.4 482 41.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-85 321.2 423 45.2
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.6e-85 320.9 422 43.8
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.6e-85 320.9 416 45.0
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.5e-85 319.7 425 44.9
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 6.0e-85 318.9 344 49.7
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.0e-84 318.2 424 45.3
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.3e-84 317.0 421 43.9
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.1e-83 314.7 439 46.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.1e-82 310.5 424 45.0
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 8.2e-82 308.5 418 41.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.4e-81 307.8 431 43.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.1e-78 298.1 440 44.3
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 6.1e-77 292.4 427 42.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.3e-75 286.6 423 42.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 5.7e-75 285.8 423 42.8
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 9.7e-75 285.0 412 43.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-73 280.4 412 42.5
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 5.3e-73 279.3 422 41.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 7.7e-72 275.4 426 39.0
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.7e-71 274.2 425 42.1
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-68 264.6 339 46.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.8e-68 264.2 414 41.3
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 4.3e-67 259.6 285 51.9
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.7e-67 258.5 411 40.6
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.7e-66 256.5 400 40.2
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.8e-66 256.1 411 40.1
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.4e-65 253.8 413 40.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.1e-65 253.4 412 40.8
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.1e-61 240.7 300 44.7
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.7e-61 240.4 300 44.7
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.0e-60 238.4 346 42.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.1e-54 218.4 363 39.7
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.0e-52 211.8 208 56.2
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 3.8e-47 193.4 432 33.6
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 8.5e-47 192.2 418 34.7
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.5e-40 169.9 272 40.1
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 7.2e-38 162.5 432 29.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-37 159.8 164 55.5
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.7e-34 150.2 163 52.1
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 8.6e-31 139.0 211 41.7
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 8.3e-26 122.5 140 49.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 8.3e-26 122.5 140 49.3
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 8.3e-26 122.5 140 49.3
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 8.3e-26 122.5 140 49.3
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.8e-25 121.3 137 50.4
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.2e-25 120.6 420 25.7
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 3.6e-21 107.1 159 37.1
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 9.8e-19 99.0 119 48.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.3e-18 98.6 86 61.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.3e-18 98.6 282 29.8
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.9e-17 94.7 122 48.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.0e-11 74.7 61 67.2
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-11 74.3 62 59.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-10 72.0 83 47.0
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-09 68.9 54 53.7
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.4e-09 68.6 67 53.7
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.4e-09 68.6 67 53.7
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 2.4e-09 67.8 179 30.2
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.2e-09 67.4 93 45.2
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.2e-09 67.4 93 45.2
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.1e-09 67.0 90 46.7
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 9.2e-09 65.9 67 53.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 9.2e-09 65.9 67 53.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 9.2e-09 65.9 67 53.7
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-08 65.1 84 46.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 6.0e-08 63.2 125 36.0
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 3.9e-07 60.5 50 56.0
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 5.1e-07 60.1 55 50.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-06 58.9 75 42.7
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 3.3e-06 57.4 111 32.4
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 5.6e-06 56.6 94 35.1


User provided reference genes

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