Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.4e-86 321.6 160 100.0
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 6.6e-82 307.4 158 96.2
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 3.7e-77 291.6 158 88.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.7e-75 285.4 157 88.5
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 3.5e-75 285.0 158 86.7
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.8e-75 283.9 158 86.1
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 7.8e-75 283.9 158 86.1
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.3e-74 282.3 158 85.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.0e-74 281.2 158 85.4
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 8.6e-74 280.4 158 84.8
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.9e-73 279.3 158 84.2
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.5e-73 278.9 155 86.5
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 3.3e-73 278.5 158 84.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.6e-73 277.7 158 84.2
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.6e-72 276.2 158 85.4
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.8e-72 275.4 158 85.4
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.6e-72 275.0 158 85.4
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 3.6e-72 275.0 157 83.4
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.7e-72 274.6 157 84.1
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 6.1e-72 274.2 156 84.6
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 6.1e-72 274.2 156 84.6
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.0e-71 273.5 157 84.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 4.0e-71 271.6 153 84.3
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.0e-71 271.6 153 84.3
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.0e-71 271.6 158 83.5
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 8.9e-71 270.4 158 81.6
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 8.9e-71 270.4 158 82.9
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 2.0e-70 269.2 158 82.9
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.4e-70 268.5 158 82.9
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 3.4e-70 268.5 159 84.9
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 7.5e-70 267.3 158 82.9
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.3e-69 266.5 153 83.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.3e-69 266.5 157 81.5
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.9e-69 265.4 157 82.2
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 2.9e-69 265.4 158 81.6
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 2.9e-69 265.4 158 82.9
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 6.4e-69 264.2 158 81.0
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 6.4e-69 264.2 158 76.6
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.1e-68 263.5 156 82.1
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.4e-68 263.1 154 83.8
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.2e-68 261.9 153 81.7
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 4.1e-68 261.5 159 81.8
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 5.4e-68 261.2 157 81.5
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 5.4e-68 261.2 157 79.0
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.2e-67 260.0 158 81.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.0e-67 259.2 157 82.2
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.7e-67 258.8 154 81.8
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 2.7e-67 258.8 158 79.7
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 3.5e-67 258.5 156 79.5
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 4.6e-67 258.1 157 77.1
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 7.8e-67 257.3 158 80.4
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 7.8e-67 257.3 146 84.2
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 7.8e-67 257.3 163 79.1
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 3.0e-66 255.4 161 80.1
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 3.0e-66 255.4 161 76.4
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 3.9e-66 255.0 155 80.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 3.9e-66 255.0 155 80.6
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.9e-66 255.0 155 81.3
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 5.0e-66 254.6 156 75.0
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.0e-66 254.6 161 79.5
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 5.0e-66 254.6 157 77.7
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 6.6e-66 254.2 141 87.9
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 8.6e-66 253.8 141 87.2
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.5e-65 253.1 157 74.5
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.9e-65 252.7 163 77.9
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.9e-65 252.7 154 78.6
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.9e-65 252.7 157 80.3
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.9e-65 252.7 146 82.9
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.9e-65 252.7 155 80.6
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.5e-65 252.3 163 76.7
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 4.3e-65 251.5 152 80.9
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 4.3e-65 251.5 161 79.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.3e-65 251.5 141 86.5
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 4.3e-65 251.5 161 76.4
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 4.3e-65 251.5 157 79.6
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 5.6e-65 251.1 156 78.2
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 7.3e-65 250.8 141 87.2
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 9.5e-65 250.4 153 79.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.8e-64 248.8 163 76.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 3.6e-64 248.4 155 76.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 4.7e-64 248.1 181 70.2
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 6.2e-64 247.7 155 78.1
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 8.0e-64 247.3 143 82.5
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.8e-63 246.1 156 75.6
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 3.1e-63 245.4 178 70.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 8.9e-63 243.8 156 75.6
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.2e-62 243.4 142 79.6
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.0e-62 242.7 141 81.6
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 153 74.5
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.0e-62 242.7 179 69.3
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 3.4e-62 241.9 156 75.6
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.4e-62 241.9 142 82.4
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 5.8e-62 241.1 158 74.7
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 5.8e-62 241.1 145 79.3
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.3e-61 240.0 141 80.9
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.3e-61 240.0 156 74.4
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.7e-61 239.6 157 77.1
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 6.4e-61 237.7 139 79.1
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 8.3e-61 237.3 160 75.6
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.1e-60 236.9 156 73.1
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 4.1e-60 235.0 156 73.7
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 5.4e-60 234.6 156 73.7
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 7.0e-60 234.2 142 74.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.1e-59 232.6 156 72.4
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 6.6e-58 227.6 156 71.2
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 6.6e-58 227.6 159 70.4
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 6.6e-58 227.6 159 70.4
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 8.6e-58 227.3 144 75.7
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.5e-57 226.5 156 70.5
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.2e-56 223.4 156 70.5
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.2e-56 223.4 156 70.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.6e-56 223.0 156 70.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.6e-56 223.0 156 69.9
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.6e-56 223.0 156 69.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 3.6e-56 221.9 155 71.0
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 8.1e-56 220.7 155 70.3
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.3e-53 213.4 147 72.8
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 4.9e-53 211.5 160 66.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.4e-52 209.9 156 71.8
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 4.1e-52 208.4 198 55.6
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.6e-48 196.4 125 73.6
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 6.8e-47 191.0 151 61.6
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 2.1e-43 179.5 120 67.5
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.7e-43 179.1 111 75.7
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-39 167.2 122 67.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 9.0e-39 164.1 93 86.0
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 9.3e-36 154.1 93 76.3
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.7e-35 152.5 153 51.6
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 2.3e-34 149.4 142 50.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 6.2e-32 141.4 87 77.0
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.0e-31 137.5 98 68.4
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.1e-28 130.6 141 46.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 4.3e-25 118.6 73 76.7
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-22 110.5 116 50.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 2.5e-20 102.8 116 46.6
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.4e-14 82.4 48 79.2
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.0e-13 80.9 50 80.0


User provided reference genes

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