Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 2.4e-113 412.1 204 100.0
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.4e-68 262.7 153 81.0
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 4.0e-68 261.9 152 82.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 7.6e-67 257.7 160 78.1
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 2.9e-66 255.8 153 77.8
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.9e-66 255.8 152 80.3
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 2.9e-66 255.8 151 82.1
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 3.8e-66 255.4 151 78.1
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 1.4e-65 253.4 151 82.1
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 7.1e-65 251.1 150 79.3
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 9.3e-65 250.8 151 81.5
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.6e-64 250.0 153 78.4
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.5e-64 248.8 151 78.8
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 7.9e-64 247.7 150 79.3
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.0e-63 247.3 173 70.5
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 3.9e-63 245.4 144 79.9
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 3.9e-63 245.4 152 78.3
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 5.1e-63 245.0 149 75.8
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 6.6e-63 244.6 148 79.1
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 6.6e-63 244.6 152 77.0
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 8.7e-63 244.2 152 75.7
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.1e-62 243.8 187 66.3
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 3.3e-62 242.3 152 77.0
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 4.3e-62 241.9 150 78.0
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 9.6e-62 240.7 144 78.5
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 9.6e-62 240.7 155 74.2
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 9.6e-62 240.7 161 73.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 1.3e-61 240.4 153 74.5
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.3e-61 240.4 138 80.4
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.6e-61 240.0 159 71.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.6e-61 240.0 152 75.0
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.1e-61 239.6 149 73.2
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 2.1e-61 239.6 149 73.2
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 2.8e-61 239.2 151 74.8
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.8e-61 239.2 150 74.7
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 3.6e-61 238.8 150 76.0
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 4.8e-61 238.4 151 76.8
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.8e-61 238.4 152 73.7
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 4.8e-61 238.4 151 75.5
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 6.2e-61 238.0 149 77.2
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 8.1e-61 237.7 150 74.0
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.4e-60 236.9 150 74.0
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 4.0e-60 235.3 151 74.2
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 4.0e-60 235.3 146 77.4
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 6.9e-60 234.6 152 74.3
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 9.0e-60 234.2 151 69.5
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.2e-59 233.8 150 72.7
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 1.2e-59 233.8 151 73.5
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 1.2e-59 233.8 156 72.4
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.5e-59 233.4 142 78.2
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.5e-59 233.4 146 76.0
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 2.0e-59 233.0 148 73.0
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 3.4e-59 232.3 157 72.6
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.5e-59 231.9 150 72.7
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.8e-59 231.5 148 69.6
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.8e-59 231.5 148 70.3
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 5.8e-59 231.5 128 82.8
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.3e-58 230.3 150 73.3
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 2.2e-58 229.6 152 71.1
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.2e-58 229.6 186 59.7
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 2.4e-57 226.1 150 71.3
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 3.2e-57 225.7 130 79.2
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.2e-57 225.3 150 70.0
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 5.5e-57 224.9 154 68.2
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.2e-56 223.8 129 78.3
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.2e-56 223.8 128 78.1
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 2.1e-56 223.0 151 68.2
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 2.7e-56 222.6 137 73.7
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 6.0e-56 221.5 154 69.5
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 6.0e-56 221.5 152 68.4
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 2.3e-55 219.5 128 78.1
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.3e-55 219.5 161 65.8
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 3.0e-55 219.2 157 69.4
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 3.9e-55 218.8 151 68.9
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 1.9e-54 216.5 132 81.1
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.9e-54 216.5 159 65.4
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 1.9e-54 216.5 168 64.3
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 6.2e-53 211.5 151 67.5
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 6.2e-53 211.5 149 69.8
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 8.1e-53 211.1 158 66.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.1e-52 209.1 146 71.2
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.1e-52 209.1 146 71.2
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 6.9e-52 208.0 147 69.4
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 6.9e-52 208.0 147 70.1
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 6.9e-52 208.0 131 75.6
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 1.2e-51 207.2 146 67.8
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.0e-51 206.5 151 63.6
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 3.4e-51 205.7 148 68.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 5.8e-51 204.9 159 61.0
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.2e-50 203.0 146 69.9
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 4.9e-50 201.8 195 54.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 6.5e-50 201.4 149 67.8
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 6.5e-50 201.4 128 73.4
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 6.5e-50 201.4 126 76.2
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 8.4e-50 201.1 146 67.8
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 8.4e-50 201.1 146 67.8
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 8.4e-50 201.1 146 67.8
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.1e-49 200.7 146 67.8
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.1e-49 200.7 146 67.8
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 1.9e-49 199.9 152 67.8
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 4.6e-48 195.3 155 59.4
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 6.0e-48 194.9 151 63.6
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 7.9e-48 194.5 152 64.5
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 2.3e-47 193.0 145 68.3
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 5.1e-47 191.8 153 64.1
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 8.7e-47 191.0 146 65.8
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.3e-46 189.1 129 66.7
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.6e-45 186.8 107 80.4
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 8.2e-45 184.5 104 81.7
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.4e-44 183.7 106 78.3
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 3.1e-44 182.6 110 80.0
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 6.9e-44 181.4 128 69.5
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 1.0e-42 177.6 130 63.8
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 5.0e-42 175.3 128 68.0
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 5.0e-42 175.3 133 61.7
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 6.5e-42 174.9 231 43.7
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 8.5e-42 174.5 152 55.9
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 8.5e-42 174.5 149 53.7
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.1e-41 174.1 139 64.0
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 7.2e-41 171.4 128 59.4
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.6e-40 170.2 136 66.2
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 6.1e-40 168.3 109 74.3
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.6e-37 160.2 111 66.7
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.5e-35 153.7 91 76.9
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 7.7e-35 151.4 143 57.3
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.2e-33 146.0 117 60.7
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 1.0e-31 141.0 162 47.5
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 1.3e-26 124.0 97 59.8
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.5e-22 110.5 119 52.9
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 7.0e-20 101.7 191 34.0
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 5.2e-15 85.5 50 70.0
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.4e-14 82.4 57 70.2
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 5.7e-14 82.0 57 59.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.1e-12 77.8 66 60.6
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 6.8e-07 58.5 58 55.2


User provided reference genes

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