Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.0e-87 324.7 160 100.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 5.0e-82 307.8 158 96.2
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 2.7e-75 285.4 160 85.0
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 3.8e-74 281.6 160 85.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.1e-73 280.0 156 87.2
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.5e-73 278.9 155 86.5
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.3e-73 278.1 158 84.2
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 4.3e-73 278.1 158 84.2
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.6e-73 277.7 160 83.8
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.2e-72 276.6 158 83.5
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.1e-72 275.8 160 81.9
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.6e-72 275.0 160 84.4
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 83.1
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 83.1
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.0e-72 273.9 160 84.4
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 2.3e-71 272.3 160 81.9
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 83.1
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 83.8
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 5.2e-71 271.2 160 81.2
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.9e-71 270.4 160 82.5
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.2e-70 270.0 160 80.6
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 80.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 81.2
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.3e-69 266.5 155 81.3
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.7e-69 266.2 160 81.2
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.9e-69 265.4 160 79.4
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 3.7e-69 265.0 160 80.0
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 4.9e-69 264.6 160 80.0
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.9e-69 264.6 159 81.1
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 80.6
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 8.3e-69 263.8 161 82.0
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.9e-68 262.7 159 81.8
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.9e-68 262.7 160 80.6
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 2.4e-68 262.3 160 79.4
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 3.2e-68 261.9 155 81.3
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.2e-68 261.9 160 81.2
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 3.2e-68 261.9 156 80.1
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.2e-68 261.9 156 80.1
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 5.4e-68 261.2 160 79.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.0e-68 260.8 152 80.9
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 7.0e-68 260.8 156 81.4
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.2e-67 260.0 160 74.4
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 77.5
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 3.5e-67 258.5 161 80.1
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.6e-67 258.1 156 80.1
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 4.6e-67 258.1 164 76.2
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.0e-66 256.9 161 79.5
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 165 78.2
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.7e-66 256.1 152 79.6
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.7e-66 256.1 160 79.4
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 2.3e-66 255.8 156 79.5
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.3e-66 255.8 146 82.9
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 3.0e-66 255.4 158 78.5
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 3.9e-66 255.0 160 73.8
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.0e-66 254.6 157 75.8
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 6.6e-66 254.2 158 78.5
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 8.6e-66 253.8 160 76.9
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.1e-65 253.4 158 77.8
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.9e-65 252.7 153 83.7
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 3.3e-65 251.9 160 77.5
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 3.3e-65 251.9 160 77.5
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.3e-65 251.9 160 78.1
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.3e-65 251.5 154 77.9
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 141 85.1
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 7.3e-65 250.8 156 78.2
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.3e-65 250.8 141 85.8
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.2e-64 250.0 156 77.6
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.2e-64 250.0 155 79.4
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.6e-64 249.6 157 73.2
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.1e-64 249.2 165 75.2
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.8e-64 248.8 162 76.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.6e-64 248.4 160 77.5
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 6.2e-64 247.7 163 73.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 8.0e-64 247.3 141 85.1
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.8e-63 246.1 146 80.1
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.3e-63 245.7 143 81.1
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 3.1e-63 245.4 155 77.4
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.1e-63 245.4 155 77.4
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 4.0e-63 245.0 180 69.4
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 5.2e-63 244.6 178 70.2
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 5.2e-63 244.6 155 74.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 8.9e-63 243.8 163 73.0
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.6e-62 242.3 165 73.3
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.6e-62 242.3 180 68.9
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.6e-62 242.3 142 78.9
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.8e-62 241.1 141 80.9
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 5.8e-62 241.1 156 75.0
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 7.5e-62 240.7 154 76.6
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 9.8e-62 240.4 156 73.1
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 9.8e-62 240.4 160 73.1
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 9.8e-62 240.4 142 81.0
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.7e-61 239.6 146 75.3
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.2e-61 239.2 141 79.4
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 3.7e-61 238.4 160 72.5
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 4.9e-61 238.0 145 77.9
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 6.4e-61 237.7 160 71.9
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.4e-60 236.5 139 78.4
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 2.4e-60 235.7 161 73.9
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 9.2e-60 233.8 160 73.8
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.2e-59 233.4 160 70.6
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 6.0e-59 231.1 160 70.6
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 7.8e-59 230.7 142 72.5
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.0e-58 230.3 160 70.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 3.0e-58 228.8 160 70.0
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 4.3e-57 224.9 144 75.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 7.3e-57 224.2 160 68.8
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 2.1e-56 222.6 160 67.5
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 4.7e-56 221.5 156 69.9
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 4.7e-56 221.5 156 69.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.8e-55 219.5 160 68.1
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.8e-55 219.5 160 68.1
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.8e-55 219.5 160 68.1
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 2.3e-55 219.2 141 75.2
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.3e-55 219.2 160 67.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 5.2e-55 218.0 156 68.6
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 5.2e-55 218.0 141 74.5
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 5.4e-52 208.0 156 71.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.2e-51 206.8 157 65.0
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.2e-51 206.8 147 70.1
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 7.8e-51 204.1 198 54.0
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 6.8e-47 191.0 125 70.4
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.5e-46 189.9 151 61.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.6e-43 179.9 113 74.3
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 4.6e-43 178.3 130 62.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.2e-38 163.7 93 84.9
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.4e-38 161.8 119 66.4
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.1e-35 152.9 153 51.6
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 6.0e-35 151.4 93 75.3
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 5.1e-34 148.3 142 50.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 5.3e-31 138.3 87 74.7
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.0e-31 137.5 98 67.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.1e-28 130.6 141 46.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 9.6e-25 117.5 78 73.1
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 9.0e-23 110.9 116 50.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-20 103.2 116 46.6
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 7.6e-14 81.3 50 80.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.3e-13 80.5 48 75.0


User provided reference genes

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