Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 4.8e-180 634.4 325 100.0
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.6e-98 363.6 266 72.9
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 7.8e-90 334.7 269 68.0
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 6.6e-89 331.6 266 68.0
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 6.6e-89 331.6 266 66.2
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 6.6e-89 331.6 268 67.5
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.5e-88 330.5 259 67.6
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.5e-88 330.5 259 67.6
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 1.5e-88 330.5 260 66.2
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 2.5e-88 329.7 262 67.2
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 3.3e-88 329.3 259 67.6
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 3.3e-88 329.3 266 66.2
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 7.3e-88 328.2 266 64.7
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 9.5e-88 327.8 259 67.2
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 9.5e-88 327.8 267 67.4
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.2e-87 327.4 259 66.4
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 1.6e-87 327.0 274 64.6
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 2.1e-87 326.6 267 70.0
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 4.7e-87 325.5 266 68.8
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.4e-86 323.9 257 66.1
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 3.1e-86 322.8 246 67.1
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 6.8e-86 321.6 267 65.5
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 6.8e-86 321.6 264 65.9
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 1.2e-85 320.9 265 66.4
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 1.2e-85 320.9 266 65.4
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 1.5e-85 320.5 269 65.1
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.5e-85 320.5 267 65.9
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 1.5e-85 320.5 264 65.2
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 2.6e-85 319.7 269 63.9
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 3.4e-85 319.3 264 64.4
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 3.4e-85 319.3 267 64.4
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 3.4e-85 319.3 264 65.2
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 8.3e-84 314.7 274 65.3
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 8.3e-84 314.7 273 63.0
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.9e-83 313.5 276 64.1
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 4.1e-83 312.4 275 65.1
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.1e-83 311.6 267 65.5
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.1e-83 311.6 267 65.5
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 1.2e-82 310.8 265 65.3
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 1.6e-82 310.5 268 63.8
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 2.1e-82 310.1 300 59.0
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 2.7e-82 309.7 266 63.9
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 3.5e-82 309.3 272 62.5
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 4.6e-82 308.9 213 77.9
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 4.6e-82 308.9 272 62.1
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.3e-81 307.4 263 64.3
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 1.7e-81 307.0 269 61.7
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.3e-81 306.6 217 71.4
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 5.1e-81 305.4 293 58.4
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.6e-81 304.7 210 75.7
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 1.1e-80 304.3 264 62.9
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 4.3e-80 302.4 217 70.0
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 5.6e-80 302.0 263 62.0
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 7.3e-80 301.6 265 61.5
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 9.5e-80 301.2 209 73.2
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 2.1e-79 300.1 265 62.6
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 2.8e-79 299.7 261 64.8
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 6.2e-79 298.5 275 63.6
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 8.1e-79 298.1 280 57.1
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 3.1e-78 296.2 244 61.1
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 5.2e-78 295.4 265 61.9
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 5.2e-78 295.4 265 61.9
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 8.9e-78 294.7 284 62.7
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 2.6e-77 293.1 284 62.3
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 4.4e-77 292.4 188 74.5
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 9.9e-77 291.2 236 62.3
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.2e-76 290.0 274 63.1
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 1.2e-74 284.3 271 63.1
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 2.1e-74 283.5 259 59.8
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 4.6e-74 282.3 214 68.2
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 1.3e-73 280.8 276 58.7
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.3e-73 280.0 189 75.1
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 3.9e-73 279.3 266 57.5
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 3.9e-73 279.3 209 68.9
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 6.6e-73 278.5 192 70.8
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 8.6e-73 278.1 210 68.1
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 1.2e-71 274.2 208 71.6
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 1.6e-71 273.9 214 66.8
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.6e-71 272.7 263 58.6
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 6.2e-71 271.9 252 60.7
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 1.4e-70 270.8 252 60.3
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 1.4e-70 270.8 252 60.3
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 1.4e-70 270.8 252 60.3
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 1.8e-70 270.4 230 62.6
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 4.0e-70 269.2 258 57.8
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 5.2e-70 268.9 252 60.3
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 9.9e-69 264.6 213 63.8
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 2.2e-60 236.9 211 58.3
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 6.4e-60 235.3 267 55.1
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 3.3e-56 223.0 210 59.0
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 9.3e-51 204.9 199 56.3
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.1e-50 203.8 225 49.3
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 5.3e-46 189.1 122 75.4
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 5.8e-45 185.7 140 66.4
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.5e-40 170.2 124 67.7
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 5.1e-33 146.0 99 73.7
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 1.8e-30 137.5 102 68.6
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 5.9e-29 132.5 92 68.5
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 1.7e-28 131.0 147 57.8
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 1.7e-28 131.0 117 59.8
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 2.9e-28 130.2 147 57.8
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 8.8e-25 118.6 70 80.0
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 9.7e-24 115.2 74 77.0
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 1.5e-21 107.8 57 87.7
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.7e-20 104.4 105 55.2
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 2.7e-18 97.1 189 34.9
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.4e-17 94.7 180 32.8
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 4.4e-16 89.7 48 83.3
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 5.7e-16 89.4 128 48.4
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 5.7e-16 89.4 55 78.2
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 6.3e-15 85.9 247 29.6
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.5e-13 80.1 84 52.4
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 5.9e-13 79.3 48 79.2
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 2.5e-11 73.9 47 76.6
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 3.0e-09 67.0 124 41.9
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 4.0e-09 66.6 77 44.2
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 2.6e-08 63.9 41 75.6
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.3e-07 59.3 44 68.2


User provided reference genes

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