Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 6.8e-20 100.5 90 100.0
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 6.0e-16 87.4 90 87.8
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.0e-15 86.7 90 87.8
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-14 83.2 90 88.9
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-14 83.2 90 88.9
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 4.3e-14 81.3 90 81.1
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.6e-14 80.9 90 87.8
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 2.1e-13 79.0 89 83.1
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.8e-13 78.6 87 50.6
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 3.6e-13 78.2 86 82.6
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.6e-13 78.2 90 81.1
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.8e-12 75.9 90 48.9
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.8e-12 75.9 88 81.8
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.4e-12 75.5 90 81.1
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 4.0e-12 74.7 89 50.6
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 5.3e-12 74.3 86 50.0
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.3e-12 74.3 90 81.1
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 6.9e-12 73.9 90 66.7
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.0e-12 73.6 90 62.2
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.0e-12 73.6 89 80.9
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 3.4e-11 71.6 90 65.6
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.4e-11 71.6 90 71.1
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.4e-11 71.2 90 46.7
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.4e-11 71.2 90 64.4
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 4.4e-11 71.2 90 83.3
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 7.6e-11 70.5 103 44.7
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 9.9e-11 70.1 90 64.4
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 9.9e-11 70.1 90 48.9
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 9.9e-11 70.1 90 80.0
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 1.3e-10 69.7 90 51.1
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.3e-10 69.7 90 50.0
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.7e-10 69.3 89 49.4
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 2.2e-10 68.9 90 76.7
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 2.9e-10 68.6 78 50.0
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 4.9e-10 67.8 90 54.4
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 8.4e-10 67.0 90 77.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 8.4e-10 67.0 106 42.5
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 8.4e-10 67.0 106 42.5
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.1e-09 66.6 88 58.0
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.1e-09 66.6 85 80.0
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.4e-09 66.2 78 80.8
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.9e-09 65.9 90 47.8
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 1.9e-09 65.9 90 81.1
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 1.9e-09 65.9 90 81.1
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 2.4e-09 65.5 108 43.5
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 2.4e-09 65.5 89 48.3
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.2e-09 65.1 90 47.8
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 4.2e-09 64.7 78 82.1
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 5.4e-09 64.3 90 50.0
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 5.4e-09 64.3 90 72.2
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.2e-08 63.2 88 46.6
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.2e-08 63.2 111 40.5
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.1e-08 62.4 90 78.9
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 2.7e-08 62.0 106 43.4
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.7e-08 62.0 86 41.9
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.5e-08 61.6 78 46.2
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 4.6e-08 61.2 89 43.8
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 4.6e-08 61.2 89 43.8
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.6e-08 61.2 79 44.3
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.6e-08 61.2 78 46.2
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 6.0e-08 60.8 89 43.8
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.0e-07 60.1 90 75.6
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.3e-07 59.7 77 45.5
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.7e-07 59.3 78 78.2
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 2.3e-07 58.9 86 41.9
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 2.3e-07 58.9 73 46.6
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 3.0e-07 58.5 78 46.2
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 3.9e-07 58.2 85 41.2
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 3.9e-07 58.2 89 42.7
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.9e-07 58.2 81 65.4
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 5.1e-07 57.8 81 76.5
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 6.6e-07 57.4 81 46.9
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 6.6e-07 57.4 78 44.9
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 8.7e-07 57.0 85 45.9
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 8.7e-07 57.0 90 66.7
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 8.7e-07 57.0 90 45.6
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.7e-07 57.0 74 83.8
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.5e-06 56.2 81 45.7
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 3.3e-06 55.1 72 47.2
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 4.3e-06 54.7 81 45.7
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 4.3e-06 54.7 85 43.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 4.3e-06 54.7 84 44.0
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.3e-06 54.7 88 39.8
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.3e-06 54.7 88 39.8
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 4.3e-06 54.7 27 92.6
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.3e-06 54.7 130 34.6
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 5.6e-06 54.3 27 96.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 7.3e-06 53.9 90 47.8
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 7.3e-06 53.9 82 47.6
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 7.3e-06 53.9 116 35.3
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 9.6e-06 53.5 85 43.5
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.6e-06 53.5 27 92.6
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 9.6e-06 53.5 27 92.6
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 9.6e-06 53.5 95 38.9
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 9.6e-06 53.5 27 92.6


User provided reference genes

Program Settings