Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 9.0e-97 357.1 200 100.0
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 2.6e-64 249.2 200 63.5
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 9.4e-62 240.7 201 60.7
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.0e-60 235.7 162 67.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 8.8e-60 234.2 200 59.0
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 8.8e-60 234.2 200 59.0
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.0e-59 233.0 204 58.8
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 9.7e-59 230.7 200 59.0
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.8e-58 229.2 159 67.3
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.8e-58 229.2 167 65.9
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.0e-56 223.0 161 64.6
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 7.7e-56 221.1 167 63.5
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.1e-54 217.2 199 57.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.5e-54 216.1 196 56.1
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.2e-54 215.7 201 55.7
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 3.2e-54 215.7 198 55.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 5.5e-54 214.9 201 56.2
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 2.7e-53 212.6 201 55.2
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.7e-53 212.6 201 55.2
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 2.7e-53 212.6 199 55.3
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 4.7e-53 211.8 199 52.8
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 6.1e-53 211.5 197 52.8
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.0e-52 210.7 200 56.5
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 2.3e-52 209.5 157 62.4
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.0e-52 209.1 196 55.6
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 2.0e-51 206.5 157 61.1
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 2.0e-51 206.5 200 59.5
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.6e-51 206.1 201 55.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 3.4e-51 205.7 156 60.3
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 7.5e-51 204.5 201 54.7
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.3e-50 203.8 155 62.6
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.8e-50 202.6 154 66.2
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 2.8e-50 202.6 201 55.2
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 8.3e-50 201.1 198 48.0
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.1e-49 200.7 160 59.4
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 2.4e-49 199.5 156 57.7
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 4.1e-49 198.7 156 57.7
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.1e-49 198.7 156 57.1
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 5.4e-49 198.4 162 56.8
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 7.0e-49 198.0 156 57.1
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.6e-48 196.8 159 59.7
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.0e-48 196.4 200 52.0
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.7e-48 196.1 199 57.3
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.5e-48 195.7 170 59.4
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.0e-47 194.1 160 59.4
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.7e-47 193.4 161 57.8
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.9e-47 192.6 200 52.5
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.9e-47 192.6 200 52.5
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.8e-47 192.2 140 61.4
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 5.0e-47 191.8 150 57.3
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 8.6e-47 191.0 152 57.2
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 1.1e-46 190.7 160 58.8
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.1e-46 190.7 160 53.8
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.5e-46 190.3 160 58.1
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.9e-46 189.9 135 68.1
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 4.2e-46 188.7 163 56.4
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 4.2e-46 188.7 155 57.4
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 7.2e-46 188.0 213 46.9
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.2e-45 187.2 160 57.5
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.1e-45 186.4 197 46.2
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 4.7e-45 185.3 163 54.0
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 4.7e-45 185.3 149 57.0
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.4e-44 183.7 160 54.4
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.4e-44 183.7 163 54.6
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.4e-44 183.7 153 56.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 5.2e-44 181.8 151 58.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.2e-43 180.6 163 55.2
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.0e-43 179.9 168 53.0
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 3.4e-43 179.1 156 48.7
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 4.4e-43 178.7 170 54.7
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 2.8e-42 176.0 162 51.9
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 4.9e-42 175.3 158 50.0
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 4.9e-42 175.3 161 53.4
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.3e-42 174.5 155 49.0
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.3e-42 174.5 155 49.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 8.3e-42 174.5 140 57.1
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.4e-41 173.7 156 50.6
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.4e-41 173.7 161 50.3
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.4e-41 172.9 161 52.2
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-40 170.2 159 52.8
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.6e-40 170.2 159 53.5
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 2.0e-40 169.9 157 49.0
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 3.5e-40 169.1 160 50.0
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 4.5e-40 168.7 165 46.7
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 5.9e-40 168.3 158 49.4
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 7.8e-40 167.9 137 52.6
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-39 167.5 159 53.5
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.0e-39 167.5 159 53.5
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.0e-39 167.5 159 53.5
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.7e-39 166.8 155 47.7
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 2.9e-39 166.0 159 52.8
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 2.9e-39 166.0 161 53.4
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 3.8e-39 165.6 146 52.1
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 8.6e-39 164.5 159 49.1
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-38 164.1 158 52.5
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-38 164.1 158 52.5
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 1.1e-38 164.1 160 51.2
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 1.9e-38 163.3 157 49.0
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.9e-38 163.3 163 47.9
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 9.5e-38 161.0 151 52.3
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 9.5e-38 161.0 163 47.2
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.6e-37 160.2 159 46.5
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.6e-37 160.2 158 47.5
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 6.1e-37 158.3 154 48.1
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 8.0e-37 157.9 197 43.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 8.0e-37 157.9 158 46.8
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.0e-36 156.0 141 50.4
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 3.0e-36 156.0 158 48.1
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 4.0e-36 155.6 159 52.8
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 5.2e-36 155.2 101 66.3
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 6.8e-36 154.8 169 45.6
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-35 154.1 159 52.8
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 1.2e-35 154.1 202 42.1
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.5e-35 153.7 162 48.1
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 7.5e-35 151.4 162 45.7
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 9.8e-35 151.0 159 52.2
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 9.8e-35 151.0 200 45.5
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.7e-34 149.1 163 46.0
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.4e-33 147.1 162 47.5
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.4e-33 146.4 158 44.9
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.2e-33 146.0 157 50.3
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 4.1e-33 145.6 157 45.9
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.6e-32 143.7 162 43.8
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.0e-32 143.3 162 43.8
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 6.0e-32 141.7 162 43.2
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 7.8e-32 141.4 145 44.1
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.7e-31 140.2 163 41.1
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.5e-30 137.1 155 45.8
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.5e-30 137.1 158 43.7
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 4.3e-30 135.6 159 49.7
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 4.3e-30 135.6 155 42.6
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.2e-29 134.0 158 43.0
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 4.7e-29 132.1 159 49.1
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 6.8e-28 128.3 157 43.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 8.9e-28 127.9 154 42.9
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.2e-27 127.5 145 40.0
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 5.8e-27 125.2 159 42.1
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.2e-26 123.2 110 53.6
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.9e-25 120.2 159 46.5
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.9e-25 120.2 118 50.0
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 1.2e-24 117.5 110 47.3
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.6e-24 117.1 127 45.7
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.7e-23 113.6 131 44.3
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.1e-20 102.8 164 38.4
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 7.5e-19 98.2 155 36.1
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 3.7e-18 95.9 201 40.8
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 3.2e-17 92.8 152 36.8
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.7e-16 89.7 155 31.0
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 4.6e-16 89.0 159 35.2
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.6e-16 89.0 153 35.3
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.0e-15 87.8 160 31.2
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 1.3e-15 87.4 102 43.1
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.7e-15 87.0 107 38.3
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.7e-15 87.0 150 33.3
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.0e-15 86.3 130 33.8
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.3e-14 82.8 162 33.3
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-13 80.9 152 35.5
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.6e-13 80.5 155 35.5
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.8e-13 79.7 131 35.9
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.6e-13 79.3 143 33.6
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.2e-13 78.6 143 34.3
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.8e-10 69.3 150 31.3
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.4e-09 66.6 143 29.4
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.6e-08 63.9 202 29.2
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.5e-06 57.4 158 29.7
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.5e-06 57.4 158 29.7
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.3e-06 56.2 123 30.1
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 4.3e-06 55.8 121 28.9


User provided reference genes

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