Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 1.7e-185 652.5 319 100.0
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.2e-151 540.0 319 80.6
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 5.8e-138 494.6 309 76.7
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 8.3e-137 490.7 321 74.8
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.4e-136 490.0 319 74.9
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 1.2e-135 486.9 320 71.9
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 1.0e-134 483.8 320 73.1
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.1e-133 480.3 319 72.1
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 3.3e-133 478.8 319 71.8
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 4.3e-133 478.4 319 71.8
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 7.3e-133 477.6 319 73.0
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 7.3e-133 477.6 319 73.0
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 8.1e-132 474.2 320 70.9
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 1.5e-130 469.9 319 69.3
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.0e-130 469.5 332 69.0
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 6.0e-127 458.0 319 69.6
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 1.3e-126 456.8 361 65.4
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 3.9e-126 455.3 296 72.3
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 6.6e-126 454.5 356 63.5
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 5.6e-125 451.4 356 63.5
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.1e-123 445.7 314 68.8
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 1.5e-122 443.4 326 68.7
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.9e-121 439.1 324 64.5
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 4.2e-120 435.3 318 65.1
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 5.4e-120 434.9 324 63.9
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.6e-119 433.3 324 63.9
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 4.6e-119 431.8 255 78.0
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 1.6e-116 423.3 315 65.7
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 3.6e-116 422.2 326 66.6
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 8.1e-116 421.0 312 65.4
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.8e-115 419.9 298 68.5
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 3.1e-115 419.1 298 68.5
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 9.0e-115 417.5 320 63.8
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.0e-114 416.4 300 66.7
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 1.0e-110 404.1 319 60.5
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 4.3e-109 398.7 282 65.6
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 4.3e-109 398.7 322 62.4
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 5.6e-109 398.3 325 61.5
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 8.1e-108 394.4 271 70.1
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 3.4e-106 389.0 283 66.1
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.7e-105 386.7 285 64.2
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 8.4e-105 384.4 298 64.4
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 3.5e-103 379.0 323 56.3
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 6.0e-103 378.3 295 62.7
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 2.5e-101 372.9 237 72.6
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 2.8e-100 369.4 299 60.5
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 3.7e-100 369.0 282 62.1
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 1.4e-99 367.1 291 60.5
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 1.8e-99 366.7 287 61.0
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 3.1e-99 365.9 287 61.3
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 9.0e-99 364.4 308 58.4
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 4.5e-98 362.1 283 61.5
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 7.6e-98 361.3 286 59.8
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 1.3e-97 360.5 291 59.8
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 2.9e-97 359.4 319 53.3
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 4.9e-97 358.6 297 58.2
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 4.9e-97 358.6 319 53.9
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.1e-96 357.5 288 59.7
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 2.5e-96 356.3 287 61.0
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 2.5e-96 356.3 287 58.5
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 4.2e-96 355.5 288 59.0
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 4.2e-96 355.5 280 61.1
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 5.5e-96 355.1 287 58.5
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 7.1e-96 354.8 303 57.4
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 9.3e-96 354.4 295 56.6
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 1.6e-95 353.6 308 54.9
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 2.1e-95 353.2 255 61.6
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 3.5e-95 352.4 298 57.4
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 6.0e-95 351.7 299 57.5
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 6.0e-95 351.7 319 52.4
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 1.0e-94 350.9 312 56.1
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.3e-94 350.5 325 55.1
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 1.3e-94 350.5 300 57.3
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 3.0e-94 349.4 293 58.0
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 8.7e-94 347.8 289 59.2
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 1.9e-93 346.7 257 64.6
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 4.3e-93 345.5 320 54.7
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 3.7e-92 342.4 297 56.9
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 3.7e-92 342.4 297 56.9
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 6.9e-91 338.2 365 48.8
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 1.5e-90 337.0 235 66.4
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 7.6e-90 334.7 361 50.4
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 1.0e-89 334.3 305 53.4
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 2.2e-89 333.2 320 53.4
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 2.9e-89 332.8 210 74.3
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 6.5e-89 331.6 320 53.1
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 6.5e-89 331.6 256 59.8
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 1.4e-88 330.5 259 61.0
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 2.5e-88 329.7 313 54.3
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 3.2e-88 329.3 300 55.0
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 5.1e-86 322.0 281 55.9
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.9e-85 320.1 274 59.5
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.3e-73 280.8 268 54.1
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 2.6e-69 266.5 211 61.6
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 1.7e-68 263.8 289 43.6
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 5.3e-67 258.8 289 46.0
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 3.6e-55 219.5 157 69.4
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 1.5e-45 187.6 344 35.8
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 8.3e-44 181.8 132 60.6
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 3.1e-43 179.9 140 61.4
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 1.1e-40 171.4 141 57.4
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 6.4e-36 155.6 124 61.3
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 2.5e-32 143.7 237 36.3
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 9.8e-29 131.7 86 69.8
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 2.2e-28 130.6 116 55.2
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 2.9e-28 130.2 86 68.6
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 1.4e-27 127.9 255 33.7
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 4.6e-26 122.9 86 65.1
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 5.2e-22 109.4 138 43.5
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 6.6e-17 92.4 64 68.8
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 1.6e-15 87.8 58 67.2
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 2.8e-15 87.0 102 47.1
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 7.6e-13 79.0 53 64.2
Atru.chr3.1390 Acer truncatum HOM05D000593 ORTHO05D000562 6.6e-09 65.9 38 84.2
Atru.chr9.1259 Acer truncatum HOM05D000593 ORTHO05D002268 6.6e-09 65.9 38 84.2
Cre01.g055469 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 9.6e-08 62.0 121 30.6
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 4.7e-07 59.7 180 24.4


User provided reference genes

Program Settings