Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 6.6e-75 284.3 179 100.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 6.9e-40 167.9 174 59.8
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.4e-39 165.6 183 52.5
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.0e-38 161.8 171 53.2
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 8.5e-38 161.0 176 53.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.1e-37 160.6 179 51.4
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 7.2e-37 157.9 175 66.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.7e-36 155.2 180 50.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.7e-36 155.2 182 50.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.1e-36 154.8 179 50.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.0e-35 154.1 176 54.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.4e-35 153.7 174 52.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.0e-35 152.5 181 55.8
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.5e-34 150.2 184 48.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.7e-34 148.3 186 47.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 9.7e-34 147.5 186 48.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-33 147.1 174 46.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.8e-33 146.0 186 47.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.8e-33 145.2 169 50.9
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.2e-33 144.4 186 46.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 179 48.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-32 142.5 165 47.9
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 4.1e-32 142.1 180 48.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 7.0e-32 141.4 172 50.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 2.0e-31 139.8 170 47.1
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.6e-31 139.4 174 43.1
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.6e-31 139.4 177 49.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.0e-30 137.5 170 53.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.3e-30 137.1 162 46.3
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.7e-30 136.7 184 42.9
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 3.8e-30 135.6 177 49.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 5.0e-30 135.2 173 48.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.5e-30 134.8 159 47.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 6.5e-30 134.8 182 46.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 8.5e-30 134.4 182 54.4
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-29 134.0 176 47.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.1e-29 134.0 170 47.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.1e-29 134.0 178 46.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.5e-29 133.7 174 46.6
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.5e-29 133.7 172 59.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 178 46.6
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.9e-29 133.3 190 45.8
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.9e-29 133.3 163 52.1
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.9e-29 133.3 179 49.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.5e-29 132.9 179 44.1
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 2.5e-29 132.9 183 44.3
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.5e-29 132.9 179 46.4
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.2e-29 132.5 161 50.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 4.2e-29 132.1 162 45.1
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 4.2e-29 132.1 175 46.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 4.2e-29 132.1 170 48.8
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.2e-29 132.1 193 44.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.2e-29 132.1 184 42.4
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.2e-29 132.1 173 47.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.5e-29 131.7 175 47.4
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-29 131.3 175 46.9
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.2e-29 131.3 190 48.4
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 9.4e-29 131.0 176 47.2
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 9.4e-29 131.0 176 47.2
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 9.4e-29 131.0 176 47.2
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 9.4e-29 131.0 172 56.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 9.4e-29 131.0 177 46.9
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 9.4e-29 131.0 169 45.0
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-28 130.6 172 46.5
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.2e-28 130.6 175 46.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-28 130.6 177 45.8
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-28 130.6 195 40.0
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.6e-28 130.2 172 46.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.1e-28 129.8 181 45.9
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-28 129.8 155 46.5
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-28 129.8 172 44.8
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.1e-28 128.3 188 47.9
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 8.0e-28 127.9 173 45.1
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 8.0e-28 127.9 173 45.1
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.0e-27 127.5 169 47.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.0e-27 127.5 176 46.0
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-27 127.1 173 45.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-27 127.1 173 45.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-27 126.3 175 45.1
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-27 126.3 162 44.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-27 126.3 180 40.6
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.3e-27 126.3 196 42.9
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.3e-27 126.3 172 44.2
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 3.0e-27 125.9 184 45.1
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.0e-27 125.9 184 45.1
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.0e-27 125.9 183 44.3
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.0e-27 125.9 184 45.1
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.0e-27 125.9 171 47.4
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 3.9e-27 125.6 173 52.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.9e-27 125.6 175 43.4
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.2e-27 125.2 189 51.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 5.2e-27 125.2 179 42.5
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 6.7e-27 124.8 163 45.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 8.8e-27 124.4 179 43.0
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.1e-26 124.0 176 47.2
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.1e-26 124.0 177 44.1
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.1e-26 124.0 186 42.5
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.0e-26 123.2 177 45.2
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.3e-26 122.5 184 41.3
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.7e-26 121.7 174 44.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.7e-26 121.7 160 45.0
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.4e-26 121.3 189 41.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 9.7e-26 120.9 177 44.1
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.3e-25 120.6 179 40.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.7e-25 120.2 186 43.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 4.8e-25 118.6 176 44.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 6.3e-25 118.2 174 43.1
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.1e-24 117.5 180 40.6
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.4e-24 117.1 162 46.9
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.4e-24 117.1 167 43.1
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-24 115.9 158 43.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 4.1e-24 115.5 183 45.9
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.1e-24 115.5 163 48.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.3e-24 115.2 194 51.0
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 9.1e-24 114.4 177 44.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.1e-24 114.4 156 44.2
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-23 113.6 173 43.4
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-23 113.2 175 42.9
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.5e-23 112.5 172 43.0
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-23 111.7 175 41.1
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 7.7e-23 111.3 190 40.5
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.3e-22 110.5 157 45.9
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.3e-22 110.5 173 42.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.3e-22 110.5 173 42.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-22 110.5 173 42.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.3e-22 110.5 165 46.7
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.2e-22 109.8 168 50.0
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.9e-22 109.4 160 49.4
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.9e-22 109.4 166 44.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 5.0e-22 108.6 193 45.1
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.5e-22 107.8 140 42.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-21 107.5 175 42.3
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.5e-21 107.1 175 41.7
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-21 105.9 142 45.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.6e-20 103.6 204 38.2
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.6e-20 103.6 179 41.3
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.6e-20 102.4 168 38.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 4.7e-20 102.1 177 40.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.7e-20 102.1 163 40.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 6.1e-20 101.7 169 39.1
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.8e-19 100.1 172 38.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 4.0e-19 99.0 164 40.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 6.8e-19 98.2 185 41.1
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.6e-18 96.3 175 37.1
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 3.4e-18 95.9 93 53.8
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 5.7e-18 95.1 155 38.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.8e-16 90.1 156 37.2
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-15 87.0 164 38.4
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.0e-15 86.7 156 35.9
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.7e-15 86.3 166 38.6
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.5e-15 85.9 98 43.9
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 4.5e-15 85.5 212 38.7
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 2.2e-14 83.2 166 37.3
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.2e-13 79.0 62 59.7
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.2e-13 78.2 143 40.6
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 7.2e-13 78.2 211 46.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.6e-12 75.9 97 44.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 6.8e-11 71.6 171 38.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.2e-10 70.9 200 28.5
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-10 70.1 97 45.4
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-10 69.3 99 44.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.4e-10 68.9 111 44.1
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-10 68.9 96 46.9
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.7e-10 68.6 50 62.0
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 9.8e-10 67.8 194 34.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-09 67.4 96 44.8
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.4e-08 63.2 150 34.0
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 2.4e-08 63.2 194 38.7
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.1e-08 62.8 171 33.9
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 7.0e-08 61.6 131 49.6
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 1.2e-07 60.8 152 37.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-07 60.1 58 51.7
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.0e-07 60.1 86 44.2
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-07 58.9 45 66.7
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.3e-06 57.4 78 38.5


User provided reference genes

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