Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 7.7e-278 959.9 506 100.0
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 6.0e-214 747.7 475 82.5
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 7.3e-212 740.7 471 82.6
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 4.6e-206 721.5 474 79.1
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.0e-206 721.1 474 80.0
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 7.9e-206 720.7 474 81.0
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 1.3e-205 719.9 473 79.3
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 9.6e-204 713.8 475 80.0
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 2.8e-203 712.2 475 78.9
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.1e-202 710.3 475 79.2
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 2.4e-202 709.1 474 78.5
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.3e-202 708.0 475 78.7
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 4.5e-201 704.9 475 78.7
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 7.6e-201 704.1 475 78.7
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 1.3e-200 703.4 481 78.2
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 1.3e-200 703.4 475 78.5
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 1.1e-199 700.3 479 77.9
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 1.4e-199 699.9 479 77.9
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 5.4e-199 698.0 475 76.6
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 1.6e-198 696.4 474 77.6
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 7.9e-198 694.1 474 78.7
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 2.8e-195 685.6 470 77.0
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.4e-194 682.6 473 76.1
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 5.3e-194 681.4 473 75.9
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 5.8e-193 677.9 474 76.2
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.0e-192 677.2 475 74.5
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 1.3e-192 676.8 475 74.5
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 3.8e-192 675.2 468 75.9
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.4e-191 673.3 477 75.3
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 3.2e-191 672.2 483 74.5
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.1e-190 669.5 467 76.0
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 4.6e-190 668.3 473 75.3
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.0e-189 667.2 476 74.6
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 1.0e-189 667.2 470 74.0
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 1.8e-189 666.4 475 73.9
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.1e-188 663.7 474 74.1
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 1.9e-188 662.9 478 72.8
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.6e-187 659.8 473 73.4
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 3.7e-187 658.7 475 73.3
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 8.2e-187 657.5 473 73.4
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 2.4e-186 656.0 474 72.2
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.2e-185 653.7 439 78.6
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 3.8e-184 648.7 475 72.2
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 8.4e-184 647.5 471 72.6
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 1.1e-183 647.1 472 72.2
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 5.5e-183 644.8 471 70.9
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 1.2e-182 643.7 469 73.1
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 1.6e-182 643.3 474 71.1
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.1e-182 642.9 469 70.8
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 6.1e-182 641.3 470 71.9
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 1.0e-181 640.6 471 72.6
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 1.3e-181 640.2 466 73.4
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 3.9e-181 638.6 474 70.0
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 2.5e-180 636.0 474 71.1
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 3.3e-180 635.6 474 71.5
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 4.3e-180 635.2 472 70.6
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 9.7e-180 634.0 473 72.1
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.3e-179 633.6 474 70.5
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 1.3e-179 633.6 474 71.1
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 2.8e-179 632.5 496 69.6
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 8.2e-179 630.9 463 71.7
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.8e-178 629.8 509 68.2
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.8e-178 629.8 496 67.9
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 2.6e-177 625.9 465 71.4
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 5.9e-177 624.8 473 70.0
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 1.3e-176 623.6 467 69.6
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.9e-176 622.5 479 69.3
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 5.0e-176 621.7 474 68.8
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 2.5e-175 619.4 470 68.5
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 4.2e-175 618.6 473 68.3
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 9.4e-175 617.5 474 68.4
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 9.4e-175 617.5 476 68.7
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 1.2e-174 617.1 474 69.2
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.2e-174 617.1 470 68.1
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.2e-174 617.1 476 68.5
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 4.6e-174 615.1 479 69.3
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 1.8e-173 613.2 472 67.8
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 8.8e-173 610.9 474 67.9
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 1.1e-172 610.5 474 67.3
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 1.1e-172 610.5 474 67.5
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 2.0e-172 609.8 472 67.4
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 2.5e-172 609.4 473 67.2
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 1.3e-171 607.1 472 67.2
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 4.1e-170 602.1 474 70.0
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 7.7e-169 597.8 477 67.3
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 7.7e-169 597.8 473 68.3
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.2e-168 596.3 497 66.6
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 3.2e-167 592.4 461 69.2
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 7.2e-167 591.3 472 66.1
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 7.2e-167 591.3 476 68.1
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 9.4e-167 590.9 472 66.1
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 1.8e-165 586.6 472 65.5
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 3.9e-165 585.5 499 63.3
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.8e-165 584.3 475 68.2
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 1.5e-164 583.6 474 64.3
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 5.7e-164 581.6 472 67.4
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 2.2e-163 579.7 470 65.5
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 3.5e-161 572.4 496 62.9
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.2e-157 558.5 375 78.4
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 5.2e-157 558.5 469 65.5
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.4e-156 555.4 450 66.0
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 7.5e-156 554.7 459 65.6
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.2e-153 547.4 471 61.8
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.6e-153 547.0 472 61.7
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 5.9e-153 545.0 475 63.2
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 1.3e-152 543.9 470 63.6
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 1.7e-152 543.5 557 56.7
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 2.7e-150 536.2 472 62.7
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 6.1e-150 535.0 601 54.1
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 1.7e-147 526.9 490 60.6
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 8.3e-147 524.6 473 61.9
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 4.5e-145 518.8 470 60.6
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 3.8e-144 515.8 487 62.4
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 7.2e-143 511.5 565 57.0
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 6.8e-141 505.0 474 61.0
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 2.6e-140 503.1 474 60.5
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.6e-137 493.8 474 59.5
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 1.7e-131 473.8 383 65.8
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 1.4e-117 427.6 613 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 8.6e-112 408.3 481 48.2
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 5.6e-111 405.6 301 68.1
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 2.6e-108 396.7 375 56.3
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 3.0e-104 383.3 346 60.4
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 6.4e-99 365.5 301 63.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 3.2e-98 363.2 450 49.3
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 1.2e-97 361.3 478 43.1
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.1e-94 350.5 485 42.1
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 5.8e-92 342.4 490 42.2
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 7.6e-92 342.0 484 44.0
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 6.0e-81 305.8 240 69.2
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 6.0e-81 305.8 430 44.9
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 6.7e-80 302.4 483 38.1
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 8.4e-75 285.4 278 57.2
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 7.1e-74 282.3 214 70.6
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 5.7e-71 272.7 227 64.3
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 5.3e-69 266.2 281 54.4
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 2.0e-68 264.2 202 66.8
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 1.0e-67 261.9 202 66.3
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 5.0e-67 259.6 188 70.7
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 1.2e-65 255.0 174 79.9
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 5.1e-64 249.6 193 68.9
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 2.2e-62 244.2 188 68.6
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 6.3e-62 242.7 591 31.5
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 3.4e-60 236.9 220 58.2
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 3.2e-58 230.3 769 27.4
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 7.9e-57 225.7 167 71.9
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 2.3e-56 224.2 224 61.2
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 3.4e-52 210.3 185 64.9
CAN.G777.11 Capsicum annuum HOM05D000361 ORTHO05D004243 2.0e-44 184.5 170 58.8
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 7.7e-44 182.6 212 51.9
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 7.7e-44 182.6 212 51.9
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 4.2e-42 176.8 242 43.8
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 2.7e-41 174.1 129 72.9
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 6.1e-41 172.9 126 65.9
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.1e-37 162.2 212 47.6
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 4.5e-36 156.8 124 75.8
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 4.4e-31 140.2 108 62.0
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 1.8e-29 134.8 528 25.0
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 6.5e-27 126.3 135 50.4
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 2.4e-21 107.8 129 45.7
Dinv10096 Davidia involucrata HOM05D000361 ORTHO05D004243 4.5e-20 103.6 56 83.9
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 2.9e-19 100.9 89 56.2
MCO10G287 Micromonas commoda HOM05D000361 ORTHO05D004243 1.9e-18 98.2 496 24.4
PRCOL_00004542 Prasinoderma coloniale HOM05D000361 ORTHO05D004243 1.9e-18 98.2 223 29.1
Hma1.2p1_0568F.1_g180240 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 2.2e-14 84.7 60 71.7
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 9.5e-10 69.3 58 56.9
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 1.2e-07 62.4 45 64.4
DCAR_010084 Daucus carota HOM05D000361 ORTHO05D015272 2.0e-07 61.6 49 61.2
TAR362G1176 Trochodendron aralioides HOM05D000361 ORTHO05D004243 4.4e-07 60.5 47 66.0
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 6.4e-06 56.6 56 48.2


User provided reference genes

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