Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.7e-280 968.0 492 100.0
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.1e-209 733.4 490 76.3
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 6.9e-199 697.6 495 72.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.0e-198 696.0 501 71.3
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.0e-197 693.7 474 73.4
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.0e-197 693.7 520 69.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.4e-196 689.9 492 71.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.4e-196 689.9 470 74.5
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.9e-194 681.8 508 68.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.1e-194 681.4 508 69.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.0e-193 679.5 498 69.7
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 9.7e-193 677.2 476 72.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.4e-191 672.5 496 69.6
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.5e-190 669.8 478 71.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.9e-190 667.9 498 69.7
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 5.9e-190 667.9 501 69.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.7e-190 667.5 478 71.3
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 7.7e-190 667.5 501 68.7
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.0e-189 667.2 515 67.8
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.3e-189 666.8 471 72.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.7e-189 666.4 511 66.7
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.7e-189 666.4 514 66.5
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.7e-189 666.4 482 70.5
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 5.0e-189 664.8 482 69.5
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 8.5e-189 664.1 489 68.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.4e-188 663.3 495 68.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.9e-188 662.9 465 71.6
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.5e-188 661.4 499 67.3
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.6e-187 659.8 503 68.2
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 6.1e-187 657.9 489 68.3
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.0e-186 657.1 496 67.9
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.8e-186 656.4 497 67.6
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.0e-186 655.6 499 66.7
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 3.3e-185 652.1 520 65.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 5.7e-185 651.4 492 69.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.7e-185 651.4 490 68.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 9.7e-185 650.6 500 66.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.3e-184 650.2 483 67.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.7e-184 649.8 467 71.1
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 8.2e-184 647.5 496 68.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.8e-183 646.4 495 67.1
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 9.1e-183 644.0 485 69.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.2e-182 643.7 513 66.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.2e-182 643.7 499 66.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 3.5e-182 642.1 481 68.8
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 7.7e-182 641.0 507 64.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 1.3e-181 640.2 489 67.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.8e-181 638.6 494 66.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.8e-181 638.6 488 68.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 8.5e-181 637.5 498 66.7
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.1e-180 637.1 496 67.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.7e-179 632.5 472 68.4
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.6e-179 632.1 491 65.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 4.7e-179 631.7 475 68.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.8e-178 629.8 491 65.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.3e-178 629.4 499 63.7
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.9e-178 628.6 454 69.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.6e-177 625.9 499 63.1
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.4e-177 625.2 472 67.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 5.7e-177 624.8 494 65.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.2e-176 622.9 476 67.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.8e-176 622.5 496 64.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.8e-175 619.8 496 64.5
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.1e-175 618.6 519 62.2
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.0e-175 617.8 528 62.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.1e-175 617.5 468 65.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.2e-174 617.1 454 67.4
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.9e-174 614.8 498 63.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 7.7e-174 614.4 476 63.7
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.3e-173 613.6 476 64.3
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.1e-172 610.5 500 61.8
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.1e-172 610.5 500 61.8
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 9.4e-172 607.4 500 61.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 9.4e-172 607.4 500 61.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.6e-171 606.7 503 62.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 4.7e-171 605.1 525 59.0
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 6.1e-171 604.7 476 62.8
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 6.1e-171 604.7 501 60.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 8.0e-171 604.4 487 62.8
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.0e-170 604.0 473 63.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 5.2e-170 601.7 497 61.0
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 7.5e-169 597.8 496 63.7
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.7e-169 597.4 427 69.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-168 597.0 491 62.5
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.6e-166 590.1 477 63.5
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.7e-165 586.6 480 64.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 4.4e-161 572.0 537 58.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 6.6e-157 558.1 500 58.8
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 4.0e-154 548.9 427 64.2
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 4.0e-154 548.9 401 68.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.5e-153 544.7 490 60.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.3e-152 541.6 427 63.7
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 8.3e-152 541.2 495 59.4
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 7.8e-150 534.6 562 53.6
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-148 530.4 401 67.3
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.3e-148 528.1 506 57.9
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 9.5e-148 527.7 500 55.2
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.3e-146 523.1 417 62.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.0e-141 505.4 494 54.7
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.3e-140 502.7 479 57.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 6.0e-134 481.9 494 56.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.2e-131 474.2 336 71.4
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.2e-123 447.6 482 48.8
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 3.9e-117 426.0 435 50.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 4.8e-115 419.1 270 77.8
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.9e-108 397.1 229 83.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 5.1e-93 345.9 200 81.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 8.7e-93 345.1 201 81.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 5.7e-92 342.4 293 61.8
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.4e-92 342.0 240 69.2
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.4e-92 342.0 240 69.2
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.6e-91 340.9 271 66.4
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.5e-84 317.8 320 52.2
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 8.5e-80 302.0 331 45.6
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 5.1e-77 292.7 325 48.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 4.3e-76 289.7 188 75.5
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 6.9e-74 282.3 263 59.7
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 5.5e-71 272.7 195 68.7
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-69 267.7 220 60.9
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-69 267.3 218 62.8
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 3.0e-69 266.9 179 73.7
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 3.7e-67 260.0 210 62.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.1e-66 255.4 222 59.0
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.5e-64 248.8 241 52.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 3.6e-54 216.9 158 66.5
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.6e-54 216.9 166 65.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.5e-52 211.5 169 61.5
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-40 169.9 154 60.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 5.5e-39 166.4 420 27.6
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.7e-35 154.8 480 30.4
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-32 145.2 227 41.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.0e-32 143.3 134 53.0
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-30 136.3 122 60.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.4e-26 124.4 140 46.4
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.1e-22 111.3 98 55.1
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.4e-20 103.6 55 87.3
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.3e-15 86.3 61 62.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.8e-14 84.3 54 70.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 5.8e-12 76.6 288 27.8
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.9e-12 75.9 77 54.5
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.4e-11 73.2 150 34.0
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.7e-09 67.8 103 43.7
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.7e-09 67.8 69 59.4
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.3e-08 64.7 79 44.3
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 8.1e-06 56.2 48 58.3


User provided reference genes

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