Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 0.0e+00 1296.6 655 100.0
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 5.5e-236 821.2 655 67.5
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 3.7e-163 579.3 438 66.0
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-162 575.9 438 69.4
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 9.1e-138 495.0 484 55.2
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 3.6e-134 483.0 507 55.2
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 7.0e-130 468.8 431 60.6
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 8.0e-110 402.1 356 57.9
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-104 383.3 552 38.4
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-100 371.7 473 39.3
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 2.0e-97 360.9 214 82.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 5.9e-97 359.4 498 42.8
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-94 351.7 630 34.4
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-92 345.1 191 88.0
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.4e-91 339.3 471 37.6
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.0e-89 334.3 588 35.2
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-84 318.5 481 44.3
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 1.2e-84 318.5 479 38.8
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 4.4e-84 316.6 429 40.1
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 3.9e-80 303.5 162 90.7
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 8.9e-77 292.4 548 31.4
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 3.8e-75 287.0 450 35.8
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-72 278.5 427 35.4
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.6e-72 276.2 529 35.7
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.1e-71 275.4 665 32.2
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 4.3e-71 273.5 533 33.4
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.6e-71 273.1 469 33.7
Atru.chr9.333 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-67 260.8 170 79.4
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 3.2e-66 257.3 601 33.4
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 7.1e-66 256.1 349 42.7
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-65 255.4 467 34.7
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 2.1e-65 254.6 461 34.1
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 3.5e-65 253.8 382 40.1
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 5.1e-64 250.0 542 31.4
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 6.6e-64 249.6 598 30.4
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.9e-63 248.1 499 32.3
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.6e-63 245.7 464 32.5
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.6e-63 245.7 361 35.7
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.6e-62 245.0 484 32.0
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.8e-62 244.2 464 32.3
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 3.6e-62 243.8 264 51.1
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.1e-61 240.7 452 31.9
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.0e-61 239.2 483 30.2
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.5e-60 238.4 452 32.1
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.9e-59 234.2 470 31.3
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-56 224.9 449 34.3
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.3e-56 224.6 458 31.0
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-56 223.4 317 36.9
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 1.5e-55 221.9 470 32.3
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-55 221.1 325 35.7
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-55 221.1 325 35.7
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.1e-54 216.1 300 36.3
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-53 215.3 479 29.4
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 5.3e-53 213.4 418 37.3
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 4.5e-52 210.3 176 60.2
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-50 205.3 110 84.5
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.6e-49 200.3 477 30.0
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.9e-49 199.5 227 40.5
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.9e-49 199.5 227 40.5
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.3e-48 198.7 536 30.8
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 5.1e-48 196.8 402 32.6
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.6e-47 193.4 299 36.5
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 8.2e-46 189.5 402 31.6
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-45 189.1 469 27.9
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.9e-45 186.4 667 28.3
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.0e-45 186.0 445 30.6
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.6e-44 184.5 469 30.9
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 5.8e-44 183.3 464 27.6
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 4.9e-43 180.3 407 31.0
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 8.4e-43 179.5 407 31.0
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 5.5e-42 176.8 388 30.7
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 7.1e-42 176.4 162 58.0
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 7.1e-42 176.4 447 29.5
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 2.7e-41 174.5 445 29.0
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 2.7e-41 174.5 483 26.1
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 7.9e-41 172.9 209 42.6
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 3.9e-40 170.6 508 28.1
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 1.5e-39 168.7 151 56.3
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.3e-39 167.5 302 35.1
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 9.6e-39 166.0 533 27.6
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.6e-39 166.0 274 34.7
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-38 165.6 552 25.4
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.1e-38 164.9 177 41.8
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 4.8e-38 163.7 363 31.1
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.1e-37 162.5 405 29.1
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-37 161.0 346 31.5
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.3e-37 160.2 486 25.5
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 6.9e-37 159.8 367 29.2
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.0e-35 156.0 354 29.9
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.2e-35 154.8 213 35.2
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 1.1e-34 152.5 348 29.6
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 7.2e-34 149.8 225 35.1
Atru.chr3.2328 Acer truncatum HOM05D005324 ORTHO05D001185 9.7e-31 139.4 79 74.7
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 8.2e-30 136.3 332 28.6
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 8.2e-30 136.3 318 28.6
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 4.1e-29 134.0 111 52.3
Atru.chr11.224 Acer truncatum HOM05D005324 ORTHO05D001185 9.1e-29 132.9 136 57.4
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.0e-28 131.7 497 23.5
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-28 130.2 112 54.5
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-28 130.2 112 54.5
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-27 129.0 118 50.8
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-27 127.1 380 26.3
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-26 125.2 136 44.9
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 4.2e-26 124.0 438 24.7
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-26 123.2 603 22.7
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-26 123.2 239 31.8
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 9.4e-26 122.9 136 43.4
Atru.chr11.502 Acer truncatum HOM05D005324 ORTHO05D001185 7.9e-25 119.8 113 56.6
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-24 118.6 103 57.3
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.7e-23 113.6 131 45.8
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 5.7e-23 113.6 261 28.0
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 1.8e-21 108.6 167 35.9
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 3.1e-21 107.8 220 25.9
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 9.1e-21 106.3 295 28.1
Ca_20262_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-20 105.1 196 34.2
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 4.5e-20 104.0 106 45.3
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 4.5e-20 104.0 110 42.7
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-19 102.4 86 55.8
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 1.4e-18 99.0 261 30.3
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 5.5e-18 97.1 261 28.7
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-18 96.7 185 33.5
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 1.2e-17 95.9 113 39.8
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.6e-17 94.4 111 40.5
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 4.7e-17 94.0 107 45.8
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.4e-16 92.4 133 36.1
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 2.0e-15 88.6 316 29.7
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 2.0e-15 88.6 201 31.8
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.7e-14 85.5 189 33.3
Ca_28515_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-14 85.1 108 40.7
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.8e-14 84.7 194 32.5
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 8.2e-14 83.2 188 28.7
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 1.1e-13 82.8 102 37.3
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 1.8e-13 82.0 103 39.8
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-12 79.3 78 41.0
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 7.7e-12 76.6 178 32.0
Glyma.11G236000 Glycine max HOM05D005324 ORTHO05D001185 7.7e-12 76.6 117 39.3
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 1.0e-11 76.3 136 33.1
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-11 75.1 89 38.2
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-11 75.1 89 38.2
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 2.9e-11 74.7 214 28.0
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-11 74.3 176 28.4
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.5e-11 73.6 144 30.6
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 8.5e-11 73.2 106 30.2
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 1.1e-10 72.8 102 35.3
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 1.1e-10 72.8 173 31.8
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 7.2e-10 70.1 109 36.7
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 9.4e-10 69.7 114 29.8
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 9.4e-10 69.7 114 29.8
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 1.6e-09 68.9 172 32.0
SalBow1G1180 Salvia bowleyana HOM05D005324 ORTHO05D001185 3.6e-09 67.8 102 40.2
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 3.6e-09 67.8 100 35.0
Ca_23425_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-07 62.0 128 31.2
Duzib187G1529 Durio zibethinus HOM05D005324 ORTHO05D001185 2.0e-07 62.0 86 34.9
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.6e-07 61.6 265 23.4
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 3.3e-07 61.2 108 36.1
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 3.3e-07 61.2 117 30.8
BcaB01g00899 Brassica carinata HOM05D003376 ORTHO05D001185 8.2e-06 56.6 174 27.0
C07p11800 Brassica napus HOM05D003376 ORTHO05D001185 8.2e-06 56.6 78 37.2


User provided reference genes

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