Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 2.5e-116 422.2 220 100.0
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 8.4e-88 327.4 229 77.3
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 7.6e-81 304.3 235 70.2
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.2e-78 297.0 233 70.4
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 1.0e-77 293.9 210 72.4
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 5.1e-77 291.6 220 70.0
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 6.7e-77 291.2 225 73.3
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 3.3e-76 288.9 229 69.9
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 4.3e-76 288.5 232 69.0
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.6e-76 287.3 227 69.6
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 9.6e-76 287.3 233 66.1
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.3e-75 287.0 226 69.0
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 1.3e-75 287.0 246 67.1
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 1.3e-75 287.0 225 71.1
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 2.1e-75 286.2 234 67.9
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 4.8e-75 285.0 224 68.8
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 8.2e-75 284.3 236 67.8
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.2e-75 284.3 234 67.9
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.1e-74 283.9 229 65.5
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 1.4e-74 283.5 222 69.4
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 4.1e-74 282.0 238 66.0
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 5.3e-74 281.6 227 66.5
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 6.9e-74 281.2 238 66.4
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 6.9e-74 281.2 226 65.9
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 9.0e-74 280.8 239 66.1
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.6e-73 279.3 231 68.0
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 7.6e-73 277.7 237 67.1
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 7.6e-73 277.7 226 66.4
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 1.7e-72 276.6 238 63.9
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 1.7e-72 276.6 235 63.8
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 5.0e-72 275.0 230 65.7
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 6.5e-72 274.6 249 65.1
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 3.2e-71 272.3 236 65.7
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 7.2e-71 271.2 239 65.3
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 7.2e-71 271.2 225 68.4
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 7.2e-71 271.2 225 68.4
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 9.3e-71 270.8 221 67.9
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 7.9e-70 267.7 199 72.4
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 1.0e-69 267.3 227 67.4
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.0e-69 267.3 219 68.0
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 1.0e-69 267.3 230 65.2
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 1.0e-69 267.3 201 68.7
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.3e-69 266.9 218 66.5
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 3.9e-69 265.4 225 66.7
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 1.5e-68 263.5 249 61.8
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.9e-68 263.1 282 56.7
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 4.3e-68 261.9 247 61.5
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 7.4e-68 261.2 214 65.9
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 6.3e-67 258.1 156 82.7
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 6.3e-67 258.1 249 60.2
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.1e-66 257.3 155 81.9
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 6.9e-66 254.6 189 71.4
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 5.9e-65 251.5 233 62.2
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 2.2e-64 249.6 233 61.4
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 8.5e-64 247.7 241 60.2
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 3.6e-62 242.3 182 69.8
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 7.9e-62 241.1 202 66.3
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 3.3e-60 235.7 233 58.4
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 6.9e-58 228.0 156 73.1
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.5e-52 210.3 158 67.1
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 2.4e-50 203.0 155 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 1.6e-49 200.3 187 57.2
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 3.0e-45 186.0 231 51.9
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 2.2e-43 179.9 163 56.4
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 2.4e-42 176.4 96 88.5
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 3.2e-39 166.0 247 45.7
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.8e-29 133.7 157 52.2
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.3e-29 133.3 89 74.2
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.0e-28 130.2 135 54.8
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 1.2e-20 104.4 127 55.1
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 4.9e-19 99.0 135 38.5
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 1.5e-15 87.4 48 87.5
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.9e-15 87.0 46 91.3
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 1.9e-15 87.0 48 85.4
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.3e-15 86.3 80 63.8
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.6e-15 85.5 46 89.1
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 3.6e-14 82.8 58 74.1
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.8e-13 80.5 46 84.8
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.4e-12 75.9 46 82.6
Potri.007G105401 Populus trichocarpa HOM05D007927 ORTHO05D010029 7.0e-10 68.6 109 46.8
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 4.3e-07 59.3 92 37.0
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 5.6e-07 58.9 194 23.7
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.8e-06 56.6 29 93.1
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 4.7e-06 55.8 94 31.9


User provided reference genes

Program Settings