Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.6e-72 275.4 149 100.0
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 4.4e-64 248.1 148 89.9
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.8e-62 242.7 149 87.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.1e-62 241.9 147 88.4
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.5e-61 238.4 149 83.2
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.5e-61 238.0 147 87.1
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.5e-61 238.0 149 86.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.9e-61 237.7 149 86.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.9e-61 237.7 149 86.6
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.8e-61 237.3 148 83.8
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.0e-60 236.9 145 85.5
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 2.3e-60 235.7 149 83.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.3e-60 235.7 147 86.4
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 6.6e-60 234.2 148 81.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 8.6e-60 233.8 149 81.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 8.6e-60 233.8 148 82.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.1e-59 233.4 144 85.4
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.9e-59 232.6 149 82.6
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.5e-59 232.3 149 81.9
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 82.6
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 81.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.3e-59 231.5 145 84.1
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 5.6e-59 231.1 150 83.3
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 5.6e-59 231.1 147 83.7
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 5.6e-59 231.1 149 82.6
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.3e-59 230.7 148 81.8
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 7.3e-59 230.7 147 83.0
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 149 81.2
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.6e-58 229.6 150 82.7
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.6e-58 229.6 147 82.3
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.1e-58 229.2 149 80.5
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 78.8
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 2.8e-58 228.8 147 82.3
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.8e-58 228.8 145 82.8
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 83.2
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.6e-58 228.4 146 80.8
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 4.7e-58 228.0 144 81.9
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 80.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 80.5
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 81.2
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 81.2
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 6.1e-58 227.6 147 81.6
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 6.1e-58 227.6 147 81.6
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 79.9
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 8.0e-58 227.3 144 83.3
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 79.9
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.4e-57 226.5 149 79.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 83.4
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 149 79.2
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 149 81.2
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 149 79.9
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 81.8
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 149 80.5
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 3.0e-57 225.3 149 77.9
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.0e-57 225.3 145 81.4
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 4.0e-57 224.9 149 79.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 5.2e-57 224.6 149 79.9
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 6.8e-57 224.2 144 79.9
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 6.8e-57 224.2 148 80.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.2e-56 223.4 148 79.7
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 148 81.1
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 148 81.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.6e-56 222.2 149 79.2
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.6e-56 222.2 149 79.2
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.6e-56 222.2 147 77.6
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.4e-56 221.9 141 82.3
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.4e-56 221.9 149 80.5
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 146 81.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 5.7e-56 221.1 144 77.8
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 5.7e-56 221.1 146 80.1
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 5.7e-56 221.1 149 80.5
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 7.5e-56 220.7 148 78.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 78.4
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.7e-55 219.5 135 84.4
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.7e-55 219.5 148 79.7
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.2e-55 219.2 147 80.3
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.9e-55 218.8 149 79.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.9e-55 218.8 148 79.7
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.9e-55 218.8 148 79.7
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 3.7e-55 218.4 148 79.7
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 6.4e-55 217.6 149 76.5
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.4e-54 216.5 142 78.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.8e-54 216.1 147 76.2
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 79.1
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 79.1
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 78.4
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.4e-54 215.7 147 76.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.2e-54 215.3 149 77.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.4e-54 214.5 144 76.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.0e-54 214.2 146 76.7
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.0e-54 214.2 148 77.0
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.0e-54 214.2 145 76.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 7.0e-54 214.2 148 76.4
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.2e-53 213.4 138 78.3
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.6e-53 213.0 138 78.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 6.0e-53 211.1 146 75.3
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 6.0e-53 211.1 144 73.6
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.0e-52 208.8 135 80.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 5.0e-52 208.0 147 74.8
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 5.0e-52 208.0 149 71.1
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.3e-51 205.3 136 77.2
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.6e-51 204.5 149 71.8
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 5.6e-51 204.5 144 73.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.5e-51 203.8 145 72.4
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.1e-50 202.6 149 70.5
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.8e-49 197.6 125 84.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.6e-48 195.7 139 74.8
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 3.4e-48 195.3 144 70.1
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.8e-48 193.7 150 69.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.9e-47 192.2 144 72.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 6.4e-47 191.0 150 70.0
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 8.3e-47 190.7 139 69.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 69.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.1e-46 188.3 139 68.3
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 9.2e-46 187.2 136 69.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.0e-45 186.0 140 69.3
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 3.5e-45 185.3 137 66.4
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 141 68.1
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.5e-45 185.3 150 70.0
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 118 80.5
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 68.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 68.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 68.8
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 7.8e-45 184.1 149 66.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 7.8e-45 184.1 150 69.3
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.0e-44 182.2 138 66.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 6.6e-44 181.0 133 68.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.9e-43 179.5 120 80.0
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-41 173.3 138 66.7
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.4e-41 173.3 138 66.7
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.2e-41 171.4 145 61.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.2e-40 170.2 150 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.4e-40 168.3 144 59.0
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 6.0e-37 157.9 138 58.0
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.6e-35 151.4 135 58.5
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.4e-33 146.0 132 59.1
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-32 143.7 133 58.6
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.2e-30 135.6 112 58.0
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 9.2e-30 134.0 139 54.7
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 6.9e-25 117.9 90 70.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.8e-24 114.8 109 60.6
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 9.3e-22 107.5 95 61.1
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.5e-19 100.1 135 37.8
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.5e-19 99.4 139 41.7
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 7.9e-13 77.8 87 48.3
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.0e-12 77.4 46 80.4


User provided reference genes

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