Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 1.4e-131 473.0 245 100.0
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.6e-42 175.6 260 48.5
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 7.3e-40 168.3 250 46.0
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.8e-38 163.7 239 43.9
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 5.2e-38 162.2 252 45.6
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 1.2e-37 161.0 220 46.8
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 9.8e-37 157.9 160 57.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 2.2e-36 156.8 250 46.0
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.9e-35 153.7 251 40.6
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.4e-35 153.3 205 47.3
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.2e-35 152.9 179 49.2
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 7.0e-35 151.8 205 47.8
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 9.2e-35 151.4 214 47.2
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 3.5e-34 149.4 184 52.2
Atru.chr6.3151 Acer truncatum HOM05D005305 ORTHO05D006394 1.7e-33 147.1 77 92.2
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.4e-29 132.9 178 48.3
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.3e-25 120.9 170 44.1
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.3e-25 120.2 197 43.1
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 3.3e-24 116.3 172 44.2
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.1e-23 113.6 165 43.6
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.1e-22 111.3 207 40.1
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 5.2e-22 109.0 192 40.1
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 6.8e-22 108.6 177 41.2
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.0e-21 107.1 212 37.7
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 4.4e-21 105.9 196 35.2
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 9.9e-21 104.8 197 35.5
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 3.8e-20 102.8 177 38.4
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 4.9e-20 102.4 208 38.0
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 6.4e-20 102.1 157 38.2
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 2.4e-19 100.1 160 40.0
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 1.2e-18 97.8 190 35.3
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 2.1e-18 97.1 177 35.6
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 4.6e-18 95.9 160 44.4
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.3e-17 94.4 161 40.4
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 3.0e-17 93.2 163 36.2
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 3.0e-17 93.2 213 34.3
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.9e-17 92.8 180 36.7
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 8.7e-17 91.7 173 38.7
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 8.7e-17 91.7 173 34.1
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.1e-16 91.3 209 34.9
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.9e-16 90.5 159 40.3
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 2.5e-16 90.1 172 39.5
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 2.5e-16 90.1 158 39.2
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 3.3e-16 89.7 225 35.6
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 4.3e-16 89.4 241 33.6
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 4.3e-16 89.4 241 33.6
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 4.3e-16 89.4 153 41.2
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 5.6e-16 89.0 143 39.2
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 7.3e-16 88.6 164 40.2
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 7.3e-16 88.6 178 36.0
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 9.6e-16 88.2 161 37.9
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.2e-15 87.8 174 39.1
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 1.6e-15 87.4 167 36.5
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 2.8e-15 86.7 241 33.6
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.8e-15 86.7 161 37.9
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 2.8e-15 86.7 164 35.4
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.8e-15 86.7 161 40.4
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 3.6e-15 86.3 157 42.0
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 3.6e-15 86.3 158 39.9
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 3.6e-15 86.3 158 36.7
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 4.7e-15 85.9 156 39.7
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 4.7e-15 85.9 165 35.2
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 6.2e-15 85.5 174 38.5
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 6.2e-15 85.5 175 37.7
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 6.2e-15 85.5 175 37.7
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 6.2e-15 85.5 162 34.6
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 8.1e-15 85.1 226 34.5
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.8e-14 84.0 225 36.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-14 84.0 174 38.5
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 1.8e-14 84.0 174 38.5
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 1.8e-14 84.0 158 39.2
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 1.8e-14 84.0 174 38.5
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.8e-14 84.0 165 38.8
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.8e-14 84.0 157 42.0
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 2.4e-14 83.6 172 36.0
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 3.1e-14 83.2 158 41.8
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 5.2e-14 82.4 160 36.2
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 6.9e-14 82.0 195 32.8
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 9.0e-14 81.6 166 34.3
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.2e-13 81.3 161 39.8
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.5e-13 80.9 161 37.3
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.5e-13 80.9 174 34.5
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 2.0e-13 80.5 169 34.9
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 2.6e-13 80.1 164 37.8
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.8e-13 79.0 119 41.2
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 7.6e-13 78.6 162 37.0
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 7.6e-13 78.6 147 39.5
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.7e-12 77.4 151 40.4
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 3.8e-12 76.3 188 32.4
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 4.9e-12 75.9 159 39.0
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 1.4e-11 74.3 189 33.3
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.9e-11 73.9 161 37.3
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 2.4e-11 73.6 172 33.1
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-11 73.6 172 33.7
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 2.4e-11 73.6 168 35.1
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 3.2e-11 73.2 190 33.2
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 3.2e-11 73.2 166 32.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 3.2e-11 73.2 164 32.3
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.2e-11 72.8 172 33.1
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.4e-11 72.4 171 33.3
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 1.6e-10 70.9 103 45.6
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.7e-09 67.4 161 34.8
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.3e-09 67.0 149 35.6
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-09 66.6 172 33.1
Sabra19G0015300 Salix brachista HOM05D005305 ORTHO05D006394 3.9e-09 66.2 111 39.6
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 5.6e-08 62.4 172 32.0
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 9.6e-08 61.6 168 33.9
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 6.2e-07 58.9 112 39.3
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 6.2e-07 58.9 169 31.4
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 2.4e-06 57.0 166 28.9
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 6.9e-06 55.5 147 33.3


User provided reference genes

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