Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.545 Acer truncatum HOM05D002612 ORTHO05D002859 1.9e-128 462.6 246 100.0
Ciclev10026217m.g Citrus clementina HOM05D002612 ORTHO05D002859 8.3e-52 208.0 225 52.4
TAR381G1391 Trochodendron aralioides HOM05D002612 ORTHO05D002859 2.1e-39 166.8 190 53.2
Eucgr.I00248 Eucalyptus grandis HOM05D002612 ORTHO05D002859 8.1e-39 164.9 176 51.7
PGR119G2242 Punica granatum HOM05D002612 ORTHO05D002859 8.9e-38 161.4 205 46.8
Dinv15109 Davidia involucrata HOM05D002612 ORTHO05D002859 1.7e-36 157.1 184 50.0
TWI79G0923 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 2.2e-36 156.8 226 43.8
Lalb_Chr23g0272501 Lupinus albus HOM05D002612 ORTHO05D002859 2.4e-35 153.3 188 46.8
Prupe.6G162400 Prunus persica HOM05D002612 ORTHO05D002859 2.4e-35 153.3 198 47.0
MD01G1016700 Malus domestica HOM05D002612 ORTHO05D002859 4.1e-35 152.5 181 55.2
CiPaw.04G083700 Carya illinoinensis HOM05D002612 ORTHO05D002859 5.4e-35 152.1 219 42.9
Duzib187G0226 Durio zibethinus HOM05D002612 ORTHO05D002859 6.0e-34 148.7 188 49.5
Manes.12G148500 Manihot esculenta HOM05D002612 ORTHO05D002859 1.0e-33 147.9 217 45.6
Gorai.008G099800 Gossypium raimondii HOM05D002612 ORTHO05D002859 1.7e-33 147.1 227 45.4
Cfa002873 Carpinus fangiana HOM05D002612 ORTHO05D002859 3.0e-33 146.4 178 49.4
Gohir.D11G233100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 3.9e-33 146.0 182 47.8
COL.COLO4_22413 Corchorus olitorius HOM05D002612 ORTHO05D002859 6.6e-33 145.2 196 45.9
GSVIVG01026590001 Vitis vinifera HOM05D002612 ORTHO05D002859 8.6e-33 144.8 227 42.7
Gohir.A11G228400 Gossypium hirsutum HOM05D002612 ORTHO05D002859 9.6e-32 141.4 182 46.7
Nn1g06087 Nelumbo nucifera HOM05D002612 ORTHO05D002859 9.6e-32 141.4 190 42.6
Gorai.002G151000 Gossypium raimondii HOM05D002612 ORTHO05D002859 1.2e-31 141.0 182 46.7
Phvul.009G147300 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 4.7e-31 139.0 218 42.2
Prupe.6G131200 Prunus persica HOM05D002612 ORTHO05D002859 6.2e-31 138.7 173 48.6
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 6.2e-31 138.7 178 44.4
Sc07g0001640 Simmondsia chinensis HOM05D002612 ORTHO05D002859 6.2e-31 138.7 182 45.1
Medtr3g095470 Medicago truncatula HOM05D002612 ORTHO05D002859 1.2e-29 134.4 182 46.7
Psat5g063880 Pisum sativum HOM05D002612 ORTHO05D002859 1.2e-29 134.4 185 44.3
QL06p051793 Quercus lobata HOM05D002612 ORTHO05D002859 1.2e-29 134.4 176 46.6
Glyma.09G116600 Glycine max HOM05D002612 ORTHO05D002859 4.4e-29 132.5 182 44.5
TPR.G18733 Trifolium pratense HOM05D002612 ORTHO05D002859 4.4e-29 132.5 221 41.6
vmacro18657 Vaccinium macrocarpon HOM05D002612 ORTHO05D002859 5.8e-29 132.1 225 39.1
MBI08_g14971_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 1.7e-28 130.6 182 46.7
Glyma.04G216300 Glycine max HOM05D002612 ORTHO05D002859 2.2e-28 130.2 225 40.4
RcHm_v2.0_Chr2g0119201 Rosa chinensis HOM05D002612 ORTHO05D002859 2.2e-28 130.2 182 43.4
Cc07_g17320 Coffea canephora HOM05D002612 ORTHO05D002859 4.2e-27 125.9 182 47.8
Ca_16913_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.2e-26 124.4 218 40.8
CANSAT01G0950 Cannabis sativa HOM05D002612 ORTHO05D002859 1.6e-26 124.0 224 47.8
ClCG02G000710 Citrullus lanatus HOM05D002612 ORTHO05D002859 1.6e-26 124.0 182 41.8
FvH4_1g23620 Fragaria vesca HOM05D002612 ORTHO05D002859 1.6e-26 124.0 182 42.9
FAN19G0842 Fragaria x ananassa HOM05D002612 ORTHO05D002859 1.6e-26 124.0 182 42.3
FAN26G0434 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.1e-26 123.6 182 42.3
FAN28G2197 Fragaria x ananassa HOM05D002612 ORTHO05D002859 4.6e-26 122.5 182 42.3
FAN23G2963 Fragaria x ananassa HOM05D002612 ORTHO05D002859 7.8e-26 121.7 183 41.5
Gohir.D12G092200 Gossypium hirsutum HOM05D002612 ORTHO05D002859 7.8e-26 121.7 161 48.4
Lj1g0016833 Lotus japonicus HOM05D002612 ORTHO05D002859 1.0e-25 121.3 227 38.8
CsaV3_2G018060 Cucumis sativus L. HOM05D002612 ORTHO05D002859 5.1e-25 119.0 187 43.3
AUR62017938 Chenopodium quinoa HOM05D002612 ORTHO05D002859 6.6e-25 118.6 186 41.4
Potri.019G010000 Populus trichocarpa HOM05D002612 ORTHO05D002859 6.6e-25 118.6 177 37.9
DCAR_014350 Daucus carota HOM05D002612 ORTHO05D002859 2.5e-24 116.7 175 44.0
AUR62003628 Chenopodium quinoa HOM05D002612 ORTHO05D002859 5.6e-24 115.5 179 41.9
Sabra19G0018900 Salix brachista HOM05D002612 ORTHO05D002859 2.8e-23 113.2 176 36.9
Sabra19G0023200 Salix brachista HOM05D002612 ORTHO05D002859 2.8e-23 113.2 176 36.9
Sed0024742 Sechium edule HOM05D002612 ORTHO05D002859 3.6e-23 112.8 189 40.2
CSS0021721 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 4.8e-23 112.5 143 46.9
PGSC0003DMG400003989 Solanum tuberosum HOM05D002612 ORTHO05D002859 1.4e-22 110.9 187 41.7
Sopen11g001410 Solanum pennellii HOM05D002612 ORTHO05D002859 4.0e-22 109.4 187 41.7
Solyc11g005400.2 Solanum lycopersicum HOM05D002612 ORTHO05D002859 5.3e-22 109.0 187 41.7
Sabra16G0194700 Salix brachista HOM05D002612 ORTHO05D002859 6.9e-22 108.6 211 38.9
CAN.G249.15 Capsicum annuum HOM05D002612 ORTHO05D002859 9.0e-22 108.2 180 46.1
Hma1.2p1_0070F.1_g037530 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 3.4e-21 106.3 82 59.8
Gohir.A11G221275 Gossypium hirsutum HOM05D002612 ORTHO05D002859 2.2e-20 103.6 179 39.7
Nitab4.5_0011433g0030 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.2e-20 103.6 182 40.7
Aqoxy5G02092 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 3.8e-20 102.8 192 37.0
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 3.8e-20 102.8 82 58.5
Hund19610 Selenicereus undatus HOM05D002612 ORTHO05D002859 6.4e-20 102.1 171 40.4
Nitab4.5_0001582g0020 Nicotiana tabacum HOM05D002612 ORTHO05D002859 8.4e-20 101.7 181 43.1
PSO675G0676 Papaver somniferum HOM05D002612 ORTHO05D002859 3.2e-19 99.8 193 37.3
VMungo1309G1282 Vigna mungo HOM05D002612 ORTHO05D002859 5.4e-19 99.0 83 59.0
Potri.001G308900 Populus trichocarpa HOM05D002612 ORTHO05D002859 7.1e-19 98.6 177 39.5
PSO541G4834 Papaver somniferum HOM05D002612 ORTHO05D002859 1.2e-18 97.8 180 38.9
Glyma.09G116800 Glycine max HOM05D002612 ORTHO05D002859 2.1e-18 97.1 79 62.0
Gorai.002G150500 Gossypium raimondii HOM05D002612 ORTHO05D002859 3.5e-18 96.3 181 38.1
MELO3C023267.2 Cucumis melo HOM05D002612 ORTHO05D002859 3.9e-17 92.8 228 32.0
Oeu028500.1 Olea europaea HOM05D002612 ORTHO05D002859 3.9e-17 92.8 188 33.0
EL10Ac6g15249 Beta vulgaris HOM05D002612 ORTHO05D002859 1.5e-16 90.9 171 39.2
Ah.03g146550 Amaranthus hybridus HOM05D002612 ORTHO05D002859 5.6e-16 89.0 227 30.0
Gohir.A12G079800 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.6e-15 87.4 80 57.5
CDE06G1146 Ceratophyllum demersum HOM05D002612 ORTHO05D002859 1.1e-14 84.7 219 32.4
Thecc.01G120500 Theobroma cacao HOM05D002612 ORTHO05D002859 1.1e-14 84.7 82 58.5
Gohir.D11G226380 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.8e-14 84.0 84 56.0
Actinidia14360 Actinidia chinensis HOM05D002612 ORTHO05D002859 1.2e-13 81.3 65 56.9
Aqoxy5G02093 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 1.2e-13 81.3 183 32.2
Sabra19G0022700 Salix brachista HOM05D002612 ORTHO05D002859 7.6e-13 78.6 136 33.8
Cpa.g.sc152.23 Carica papaya HOM05D002612 ORTHO05D002859 9.9e-13 78.2 133 42.1
HanXRQChr09g0259761 Helianthus annuus HOM05D002612 ORTHO05D002859 1.3e-12 77.8 238 33.2
MSTRG.23420 Avicennia marina HOM05D002612 ORTHO05D002859 1.7e-12 77.4 182 34.6
THA.LOC104807838 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 1.7e-12 77.4 180 35.6
Lsat_1_v5_gn_4_137640 Lactuca sativa HOM05D002612 ORTHO05D002859 3.8e-12 76.3 89 47.2
Actinidia12238 Actinidia chinensis HOM05D002612 ORTHO05D002859 6.4e-12 75.5 181 33.1
Migut.H01111 Erythranthe guttata HOM05D002612 ORTHO05D002859 4.2e-11 72.8 181 30.9
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 4.2e-11 72.8 181 29.8
Sed0025054 Sechium edule HOM05D002612 ORTHO05D002859 4.6e-10 69.3 187 39.6
Dinv09945 Davidia involucrata HOM05D002612 ORTHO05D002859 6.0e-10 68.9 43 79.1
Os04g0687300 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 2.3e-09 67.0 188 33.5
Peaxi162Scf00025g02430 Petunia axillaris HOM05D002612 ORTHO05D002859 2.3e-09 67.0 127 34.6
SHI11523 Sapria himalayana HOM05D002612 ORTHO05D002859 1.1e-08 64.7 80 45.0
Gohir.A12G079900 Gossypium hirsutum HOM05D002612 ORTHO05D002859 9.6e-08 61.6 67 47.8
Zm00001eb076140 Zea mays HOM05D002612 ORTHO05D002859 3.7e-07 59.7 184 30.4
Os05g0106500 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 1.4e-06 57.8 173 31.2
VMungo1309G0994 Vigna mungo HOM05D002612 ORTHO05D002859 3.1e-06 56.6 115 37.4


User provided reference genes

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