Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.9e-156 555.8 288 100.0
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 2.7e-86 322.8 206 85.0
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 1.4e-69 267.3 205 67.8
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 1.3e-67 260.8 157 84.1
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 6.9e-66 255.0 207 65.2
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.2e-62 244.2 210 62.9
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 1.8e-61 240.4 207 61.8
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 2.0e-60 236.9 208 66.3
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.6e-60 236.5 209 60.3
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.6e-60 236.5 219 59.8
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 3.3e-60 236.1 204 60.3
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 5.7e-60 235.3 209 62.2
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 5.7e-60 235.3 203 60.1
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 5.7e-60 235.3 219 58.9
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 7.4e-60 235.0 213 68.1
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 9.7e-60 234.6 206 61.7
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 1.7e-59 233.8 209 63.2
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 2.8e-59 233.0 201 62.7
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 3.7e-59 232.6 210 61.0
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 6.3e-59 231.9 211 58.8
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 6.3e-59 231.9 209 61.7
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 8.2e-59 231.5 213 60.6
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 8.2e-59 231.5 208 59.1
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.4e-58 230.7 209 61.7
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 1.8e-58 230.3 209 58.9
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 2.4e-58 229.9 206 61.7
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.1e-58 229.6 209 61.2
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 3.1e-58 229.6 208 58.7
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 4.1e-58 229.2 203 59.1
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 4.1e-58 229.2 208 60.6
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 4.1e-58 229.2 146 76.0
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 9.1e-58 228.0 206 59.7
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.6e-57 227.3 208 58.2
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 2.0e-57 226.9 211 57.8
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 2.6e-57 226.5 205 60.0
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.5e-57 226.1 207 58.5
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.5e-57 226.1 207 58.5
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 4.5e-57 225.7 203 59.1
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 7.7e-57 224.9 213 56.8
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 7.7e-57 224.9 207 58.0
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.0e-56 224.6 207 58.9
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.0e-56 224.6 207 58.9
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 1.3e-56 224.2 206 59.7
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.2e-56 223.4 203 57.1
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 2.2e-56 223.4 192 61.5
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 2.9e-56 223.0 142 75.4
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 3.8e-56 222.6 211 58.3
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 3.8e-56 222.6 211 58.3
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 1.1e-55 221.1 204 58.8
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 1.5e-55 220.7 143 72.7
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 1.5e-55 220.7 208 62.0
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 1.9e-55 220.3 203 57.6
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 1.9e-55 220.3 203 59.1
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.9e-55 220.3 204 61.8
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 1.9e-55 220.3 208 60.1
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 2.5e-55 219.9 211 56.9
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 4.2e-55 219.2 207 57.5
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 4.2e-55 219.2 217 55.8
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 5.5e-55 218.8 207 58.0
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 5.5e-55 218.8 217 58.1
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.5e-55 218.8 195 58.5
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 5.5e-55 218.8 204 61.3
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 7.2e-55 218.4 201 57.2
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 1.2e-54 217.6 202 56.4
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 2.1e-54 216.9 211 56.9
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 2.1e-54 216.9 211 55.0
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 2.7e-54 216.5 210 61.9
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 3.6e-54 216.1 170 66.5
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 6.1e-54 215.3 220 53.6
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 8.0e-54 214.9 205 57.1
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.8e-53 213.8 123 82.1
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 2.3e-53 213.4 203 56.2
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 4.0e-53 212.6 204 58.3
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 5.2e-53 212.2 204 57.4
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 5.2e-53 212.2 210 58.6
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 5.2e-53 212.2 211 55.5
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 6.7e-53 211.8 123 81.3
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 8.8e-53 211.5 178 65.2
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 1.2e-52 211.1 204 56.4
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 1.2e-52 211.1 204 56.4
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 1.2e-52 211.1 123 78.9
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 2.0e-52 210.3 215 54.9
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 2.6e-52 209.9 209 56.0
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 4.4e-52 209.1 224 54.0
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 4.4e-52 209.1 122 80.3
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 5.7e-52 208.8 204 56.4
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 5.7e-52 208.8 204 56.4
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 5.7e-52 208.8 210 57.6
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 7.5e-52 208.4 224 53.6
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 9.7e-52 208.0 205 55.1
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 1.3e-51 207.6 143 72.0
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 2.2e-51 206.8 205 56.6
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 6.3e-51 205.3 131 82.4
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 8.2e-51 204.9 127 77.2
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 1.4e-50 204.1 204 57.8
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 2.4e-50 203.4 124 75.8
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 2.4e-50 203.4 142 71.1
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 4.1e-50 202.6 203 54.2
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 2.0e-49 200.3 139 69.1
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 2.7e-49 199.9 203 57.6
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 3.5e-49 199.5 224 55.4
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 4.5e-49 199.1 204 57.8
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 5.9e-49 198.7 224 49.6
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.3e-48 197.6 139 67.6
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 1.7e-48 197.2 204 53.4
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 2.9e-48 196.4 145 64.1
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 6.5e-48 195.3 225 55.6
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 8.5e-48 194.9 142 69.0
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 5.5e-47 192.2 181 54.1
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 9.4e-47 191.4 131 68.7
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 8.0e-46 188.3 163 57.7
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 6.8e-45 185.3 109 80.7
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 6.8e-45 185.3 130 69.2
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 8.8e-45 184.9 214 52.3
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 2.0e-41 173.7 130 63.1
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 8.8e-37 158.3 105 79.0
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 7.8e-33 145.2 146 55.5
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.5e-28 131.0 65 95.4
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 5.7e-28 129.0 65 93.8
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 2.2e-27 127.1 65 92.3
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 8.3e-27 125.2 151 50.3
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 4.6e-25 119.4 81 77.8
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 5.6e-23 112.5 139 46.8
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 1.2e-22 111.3 113 48.7
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 2.8e-22 110.2 85 67.1
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 3.1e-21 106.7 107 46.7
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 1.2e-20 104.8 102 46.1
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 7.5e-20 102.1 137 45.3
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 2.4e-18 97.1 113 40.7
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 3.2e-18 96.7 85 61.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 3.2e-18 96.7 85 61.2
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 3.2e-18 96.7 85 61.2
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 4.6e-17 92.8 55 80.0
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 1.3e-16 91.3 81 59.3
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 1.6e-14 84.3 47 83.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.6e-14 84.3 52 78.8
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 4.7e-14 82.8 116 37.1
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 8.1e-14 82.0 97 41.2
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 1.4e-13 81.3 100 38.0
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 5.2e-13 79.3 47 80.9
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 3.7e-11 73.2 46 69.6
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 2.4e-10 70.5 45 71.1
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.1e-08 62.8 45 68.9
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 8.6e-08 62.0 33 84.8


User provided reference genes

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