Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 7.0e-40 166.8 81 100.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.4e-27 125.9 81 79.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.3e-27 125.2 81 80.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.0e-27 124.4 80 80.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 2.0e-26 122.1 80 78.8
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.6e-26 121.7 79 81.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 3.4e-26 121.3 80 80.0
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 3.4e-26 121.3 82 76.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 5.7e-26 120.6 81 74.1
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 7.5e-26 120.2 81 76.5
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 9.8e-26 119.8 81 74.1
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 9.8e-26 119.8 81 77.8
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 4.9e-25 117.5 79 78.5
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 6.4e-25 117.1 79 75.9
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 8.3e-25 116.7 81 77.8
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 3.2e-24 114.8 80 75.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 7.0e-24 113.6 81 74.1
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 4.6e-23 110.9 80 72.5
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.6e-23 110.9 80 72.5
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 4.6e-23 110.9 81 72.8
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 5.9e-23 110.5 79 73.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 1.0e-22 109.8 81 71.6
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.0e-22 109.8 79 73.4
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.3e-22 109.4 79 74.7
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.3e-22 109.4 82 72.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-22 109.0 81 69.1
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.9e-22 107.8 77 76.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.9e-22 107.8 77 76.6
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.9e-22 107.8 82 70.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 5.0e-22 107.5 81 70.4
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 6.6e-22 107.1 77 76.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 6.6e-22 107.1 79 69.6
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 6.6e-22 107.1 81 69.1
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 8.6e-22 106.7 81 72.8
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-21 106.3 81 71.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.5e-21 105.9 77 68.8
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.5e-21 105.1 79 67.1
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 9.5e-21 103.2 83 68.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 9.5e-21 103.2 81 67.9
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.2e-20 102.8 83 63.9
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 2.8e-20 101.7 79 70.9
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.8e-20 101.7 79 70.9
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 3.6e-20 101.3 79 72.2
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.7e-20 100.9 80 63.8
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 4.7e-20 100.9 81 65.4
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.2e-20 100.5 79 68.4
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 6.2e-20 100.5 79 70.9
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 6.2e-20 100.5 78 70.5
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 8.0e-20 100.1 79 69.6
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 8.0e-20 100.1 79 67.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-19 99.8 72 70.8
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.1e-19 99.8 72 69.4
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.1e-19 99.8 72 69.4
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.4e-19 99.4 85 67.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.8e-19 99.0 72 69.4
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-19 99.0 78 66.7
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.8e-19 99.0 72 69.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.3e-19 98.6 79 64.6
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.1e-19 98.2 76 65.8
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 4.0e-19 97.8 84 59.5
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.0e-19 97.8 72 72.2
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 6.8e-19 97.1 74 67.6
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.0e-18 95.5 79 62.0
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.6e-18 95.1 76 64.5
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.8e-18 94.0 85 61.2
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 7.5e-18 93.6 77 66.2
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 7.5e-18 93.6 72 68.1
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.3e-17 92.8 72 70.8
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.7e-17 91.3 82 59.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.7e-17 91.3 79 59.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 4.9e-17 90.9 72 63.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 6.4e-17 90.5 87 58.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 6.4e-17 90.5 80 58.8
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 8.3e-17 90.1 88 58.0
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.9e-16 89.0 79 57.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 79 60.8
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.1e-16 87.8 81 58.0
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.4e-16 87.4 73 64.4
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.4e-16 87.4 77 63.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 7.0e-16 87.0 81 59.3
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 7.0e-16 87.0 80 58.8
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 7.0e-16 87.0 88 56.8
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-15 86.3 73 60.3
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.0e-15 85.5 73 60.3
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.0e-15 85.5 72 58.3
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-15 84.7 84 56.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-15 84.7 84 56.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 4.6e-15 84.3 73 58.9
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 4.6e-15 84.3 73 58.9
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 4.6e-15 84.3 73 58.9
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 4.6e-15 84.3 73 58.9
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.6e-15 84.3 73 58.9
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 6.0e-15 84.0 73 58.9
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 7.8e-15 83.6 74 58.1
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-14 83.2 84 54.8
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-14 83.2 84 54.8
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.0e-14 83.2 84 54.8
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.0e-14 83.2 82 56.1
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.3e-14 82.8 74 56.8
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-14 82.8 73 57.5
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-14 82.8 73 57.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-14 82.8 73 57.5
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.3e-14 82.8 73 57.5
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.3e-14 82.8 73 57.5
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.3e-14 82.8 62 72.6
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.7e-14 82.4 74 58.1
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-14 82.4 73 57.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.7e-14 82.4 72 61.1
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.3e-14 82.0 73 56.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.3e-14 82.0 73 56.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.3e-14 82.0 73 56.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.3e-14 82.0 82 54.9
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.3e-14 82.0 77 59.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 3.0e-14 81.6 72 56.9
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 3.9e-14 81.3 75 57.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 5.0e-14 80.9 79 57.0
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.6e-14 80.1 78 55.1
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 8.6e-14 80.1 73 56.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 8.6e-14 80.1 86 52.3
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 53.7
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 53.7
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 53.7
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 53.7
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 53.7
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 53.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-13 79.0 83 53.0
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-13 79.0 83 53.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-13 78.6 75 54.7
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.5e-13 78.6 72 59.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.3e-13 77.8 76 53.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 4.3e-13 77.8 78 53.8
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 7.3e-13 77.0 77 53.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 9.5e-13 76.6 93 48.4
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.6e-12 75.9 88 50.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 2.1e-12 75.5 69 58.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.7e-12 74.3 70 58.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.7e-12 74.3 68 61.8
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.2e-12 73.9 77 46.8
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 8.1e-12 73.6 70 58.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.4e-11 72.8 71 53.5
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 3.1e-11 71.6 75 50.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.1e-11 71.6 74 47.3
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 5.2e-11 70.9 82 51.2
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.2e-11 70.9 78 52.6
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.8e-11 70.5 72 59.7
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 7.5e-10 67.0 71 57.7
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 9.9e-10 66.6 69 55.1
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.4e-08 60.8 85 44.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 6.0e-07 57.4 74 43.2
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.0e-06 56.6 59 54.2


User provided reference genes

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