Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 2031.9 1092 100.0
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1590.1 1086 78.0
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1477.2 1088 68.6
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1444.1 1084 71.2
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1441.0 1088 69.8
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1437.9 1135 68.2
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1433.3 1087 71.0
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1426.0 1089 68.9
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1417.1 1090 70.0
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1415.2 1090 66.7
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1409.4 1084 70.0
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1406.3 1086 68.3
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1402.5 1089 68.0
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1381.3 1090 69.1
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1377.5 1092 68.8
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1374.0 1083 68.0
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1374.0 1090 68.6
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1366.7 1090 68.7
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1359.4 1090 67.2
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1352.0 971 70.1
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1349.3 1058 69.8
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1346.6 1090 67.0
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1343.6 1106 66.2
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1331.6 1091 66.2
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1317.4 1091 65.1
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1306.6 1093 63.6
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1305.8 1071 65.5
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1305.4 1090 64.0
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1305.0 1089 65.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1299.6 1084 65.6
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1296.6 1088 63.4
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1296.6 1090 63.0
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1295.4 1091 63.2
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1293.5 1072 62.9
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1286.2 1095 62.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1285.0 1090 63.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1281.2 1094 62.5
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1279.2 1092 62.5
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1270.4 1091 61.0
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1261.1 1095 62.5
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1251.5 1095 61.6
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1248.0 1089 62.8
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1243.8 1097 62.9
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1240.7 1054 63.5
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1230.3 1082 60.9
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1216.1 1069 63.7
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1211.4 1091 60.4
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1208.0 1089 59.8
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1207.6 1086 58.9
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1203.7 1085 62.9
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1195.3 1086 63.1
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1194.5 1191 55.3
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1194.1 1090 60.8
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1193.3 1089 58.9
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1191.8 1091 60.4
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1191.4 1110 60.7
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1190.3 1088 60.8
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1187.9 1087 60.6
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1182.5 1096 59.9
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1181.8 1089 58.5
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1180.2 1087 60.2
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 0.0e+00 1177.2 1087 61.0
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1173.3 1089 57.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1165.2 1122 57.8
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1165.2 1066 60.4
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1162.1 1091 60.0
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1155.2 1090 58.7
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1154.8 1090 58.8
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1153.7 1108 58.5
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1132.5 1083 57.3
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1123.2 1089 56.5
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 0.0e+00 1123.2 1092 58.7
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1122.5 1009 58.7
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 0.0e+00 1113.6 1161 56.1
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1113.2 1109 56.3
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 0.0e+00 1091.3 1037 60.1
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 3.3e-310 1068.5 1088 53.6
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.9e-305 1052.7 1090 53.8
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 3.5e-304 1048.5 1084 52.4
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 4.5e-299 1031.6 1093 51.5
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.3e-290 1003.4 1105 54.4
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.0e-283 979.5 1100 54.4
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.5e-233 813.1 1114 45.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 5.8e-230 802.0 643 63.0
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.3e-229 800.8 720 59.7
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.4e-228 796.6 1108 43.8
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.4e-228 796.6 1108 43.8
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.0e-226 789.6 594 68.7
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.1e-210 735.7 1136 41.5
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.8e-191 674.1 624 60.9
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 2.1e-187 660.6 501 65.7
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 8.7e-186 655.2 1005 38.6
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-176 624.0 1066 35.6
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.8e-154 551.2 422 66.1
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.5e-148 530.8 430 62.8
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 5.6e-116 423.3 467 48.2
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 5.2e-114 416.8 825 32.2
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.9e-108 398.3 435 57.0
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 6.9e-106 389.8 444 55.9
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.6e-86 325.5 367 49.6
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 5.3e-82 310.5 338 52.7
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 5.8e-81 307.0 407 49.1
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.1e-79 302.8 218 66.1
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.4e-79 302.4 286 54.5
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.3e-74 283.9 447 38.3
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 7.2e-71 273.5 955 27.0
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 7.4e-68 263.5 706 27.5
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 8.2e-59 233.4 666 28.5
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 3.0e-45 188.3 158 59.5
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.7e-36 157.5 87 83.9
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 9.8e-36 156.8 251 40.2
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 4.7e-30 137.9 90 73.3
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.8e-29 136.0 160 45.0
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 4.0e-29 134.8 189 45.0
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.8e-29 134.0 105 61.0
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.4e-28 131.3 139 51.8
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 7.5e-28 130.6 212 53.3
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 9.8e-28 130.2 122 50.8
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 5.9e-25 120.9 155 66.5
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 5.0e-24 117.9 119 47.9
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 4.3e-23 114.8 141 47.5
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 4.7e-22 111.3 181 53.0
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.3e-21 109.0 116 45.7
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 8.9e-21 107.1 101 49.5
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 8.9e-21 107.1 114 45.6
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 2.6e-20 105.5 136 42.6
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 1.7e-19 102.8 112 53.6
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.0e-18 97.4 100 47.0
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 3.5e-17 95.1 140 45.0
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.0e-16 93.6 134 38.1
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 2.1e-14 85.9 87 47.1
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 2.1e-14 85.9 87 47.1
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.1e-13 83.6 646 21.5
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 3.4e-12 78.6 651 21.2
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 4.4e-12 78.2 622 20.9
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 8.3e-11 73.9 668 21.3
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.4e-10 73.2 65 53.8
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.4e-10 73.2 652 21.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.4e-10 73.2 58 60.3
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 9.2e-10 70.5 429 22.4
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.2e-09 70.1 548 20.4
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 8.6e-08 63.9 670 20.9
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 4.3e-07 61.6 61 50.8
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 9.5e-07 60.5 81 45.7
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 1.2e-06 60.1 62 46.8


User provided reference genes

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