Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.9e-97 358.2 195 100.0
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.0e-85 319.3 197 86.3
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 2.7e-85 318.9 189 88.9
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.5e-85 318.2 179 93.3
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 5.9e-85 317.8 191 86.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.7e-84 316.2 181 91.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 5.0e-84 314.7 179 91.1
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 5.0e-84 314.7 173 92.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.5e-84 313.9 179 90.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 7.2e-83 310.8 177 89.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 9.4e-83 310.5 178 90.4
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.7e-82 308.1 178 88.2
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 4.7e-82 308.1 195 83.1
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.7e-82 308.1 179 88.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.1e-82 307.8 178 89.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 8.0e-82 307.4 177 89.3
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 8.0e-82 307.4 177 89.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 8.0e-82 307.4 179 86.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 8.0e-82 307.4 189 85.2
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.0e-81 307.0 177 88.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.0e-81 307.0 177 88.7
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.0e-81 307.0 179 86.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.0e-81 307.0 178 88.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.0e-81 307.0 197 83.2
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-81 306.2 177 88.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.3e-81 305.8 174 89.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.0e-81 305.4 190 85.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.0e-81 305.1 180 86.7
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.0e-81 305.1 178 86.5
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 5.2e-81 304.7 173 89.6
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 6.8e-81 304.3 171 90.1
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 8.8e-81 303.9 189 83.6
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 8.8e-81 303.9 190 85.3
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.8e-81 303.9 179 87.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.5e-80 303.1 190 83.2
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.0e-80 302.8 190 83.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.0e-80 302.8 173 86.7
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.6e-80 302.4 178 87.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.6e-80 302.4 195 82.1
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.6e-80 302.4 174 87.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.4e-80 302.0 179 86.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.4e-80 302.0 178 85.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.4e-80 302.0 178 85.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.4e-80 301.6 196 83.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.4e-80 301.6 173 87.3
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 5.7e-80 301.2 173 89.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.5e-80 300.8 179 87.2
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 7.5e-80 300.8 173 89.6
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.7e-79 299.7 172 87.8
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.2e-79 299.3 181 86.2
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.2e-79 299.3 178 84.8
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.8e-79 298.9 172 86.0
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.8e-79 298.9 179 83.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 4.8e-79 298.1 182 83.5
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 4.8e-79 298.1 181 85.6
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 6.3e-79 297.7 182 83.5
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.3e-79 297.7 178 84.3
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.3e-79 297.7 173 87.9
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 8.3e-79 297.4 173 85.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 8.3e-79 297.4 173 87.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.1e-78 297.0 173 87.3
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.8e-78 296.2 181 84.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.8e-78 296.2 171 88.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-78 296.2 173 87.3
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.1e-78 295.4 172 84.9
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.1e-78 295.4 178 83.7
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 9.1e-78 293.9 173 87.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-77 293.1 181 84.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.6e-77 293.1 172 84.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.6e-77 293.1 172 84.3
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-77 293.1 201 77.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.7e-77 292.4 180 82.8
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.7e-77 292.4 198 78.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.5e-77 292.0 173 83.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.5e-77 292.0 221 72.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 4.5e-77 291.6 181 83.4
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 7.7e-77 290.8 173 82.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 7.7e-77 290.8 173 82.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 7.7e-77 290.8 173 82.7
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.0e-76 290.4 188 81.4
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.3e-76 290.0 174 84.5
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.7e-76 289.7 173 82.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.9e-76 288.9 181 83.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.8e-76 288.5 198 76.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.8e-76 288.5 169 85.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.8e-76 288.5 181 81.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 5.0e-76 288.1 171 83.6
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 5.0e-76 288.1 171 83.6
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 5.0e-76 288.1 171 83.6
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 5.0e-76 288.1 171 83.6
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-75 287.0 166 86.7
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-75 286.6 181 81.2
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.5e-75 286.6 181 83.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.5e-75 286.6 171 84.2
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.2e-75 285.0 192 77.1
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 4.2e-75 285.0 172 83.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 7.2e-75 284.3 175 82.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.2e-75 284.3 182 80.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.2e-74 283.5 192 77.1
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.1e-74 282.7 205 73.7
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.8e-74 282.3 172 81.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 3.6e-74 282.0 172 83.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 4.7e-74 281.6 171 83.0
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 6.1e-74 281.2 168 83.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 8.0e-74 280.8 241 67.2
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.0e-73 278.9 214 70.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 173 80.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.0e-72 276.2 154 92.9
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.7e-71 273.1 181 79.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.8e-69 264.2 153 88.2
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.7e-68 263.1 196 74.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.9e-68 262.3 233 60.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-65 252.7 179 77.1
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.2e-64 250.4 168 73.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 7.5e-64 247.7 152 82.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 4.9e-63 245.0 181 74.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.2e-62 242.3 144 83.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.0e-61 239.6 135 89.6
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-59 233.8 135 87.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.1e-59 233.8 168 70.2
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 5.6e-59 231.5 169 68.6
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.8e-58 229.2 128 90.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 3.6e-58 228.8 135 85.9
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 9.8e-56 220.7 172 65.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.3e-55 220.3 173 61.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.7e-53 212.6 130 83.1
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 6.0e-53 211.5 203 63.1
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-51 206.8 123 84.6
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 8.1e-50 201.1 128 79.7
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.2e-48 197.2 119 81.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-48 197.2 112 88.4
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.7e-47 192.2 110 87.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 7.1e-46 188.0 119 79.8
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 9.5e-43 177.6 105 84.8
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-41 172.6 109 79.8
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.0e-40 169.9 113 78.8
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-40 169.9 102 80.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.6e-36 154.5 88 89.8
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-35 153.7 93 80.6
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 9.6e-35 151.0 166 46.4
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.2e-34 150.6 102 76.5
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 5.2e-33 145.2 94 80.9
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 9.9e-32 141.0 162 45.1
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.7e-31 140.2 95 80.0
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-31 139.8 82 84.1
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.3e-28 129.8 104 68.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-28 129.4 96 70.8
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 6.6e-28 128.3 184 35.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.1e-27 127.5 168 38.7
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.1e-26 123.2 90 65.6
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.6e-26 122.5 75 81.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 6.2e-26 121.7 101 67.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.4e-22 108.6 66 78.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-16 88.6 56 76.8
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.6e-13 80.5 47 80.9
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.0e-12 76.3 111 46.8
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-12 75.1 114 43.9
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-12 75.1 114 43.9
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.5e-11 73.2 114 43.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-11 72.8 114 43.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.6e-10 70.5 53 69.8
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 3.1e-09 66.2 115 42.6
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-07 60.8 36 77.8
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 9.3e-06 54.7 53 58.5


User provided reference genes

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