Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 0.0e+00 1267.3 634 100.0
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.7e-226 789.6 672 62.6
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.2e-224 783.5 689 62.8
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.0e-222 776.2 686 61.4
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 4.4e-222 775.0 687 62.0
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.7e-218 763.1 694 61.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 9.5e-217 757.3 672 60.9
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.0e-215 753.8 682 59.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 4.0e-215 751.9 659 61.3
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 6.8e-215 751.1 661 60.5
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 7.5e-214 747.7 682 59.4
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.2e-213 746.1 679 59.6
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.6e-211 740.0 723 57.7
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.1e-207 727.2 668 59.4
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.3e-207 726.1 691 58.6
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.2e-207 724.9 633 61.9
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 2.6e-206 722.6 674 58.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 3.2e-204 715.7 654 60.2
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 3.0e-202 709.1 672 56.4
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 6.2e-200 701.4 683 56.8
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 8.9e-199 697.6 688 57.0
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 8.9e-199 697.6 668 58.4
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 3.4e-198 695.7 675 57.2
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 5.8e-198 694.9 680 57.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.7e-197 693.3 683 57.2
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 6.4e-197 691.4 676 57.5
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-196 690.6 695 56.0
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.4e-196 690.3 667 57.7
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.9e-196 689.9 685 56.9
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.9e-196 689.9 667 56.4
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 3.2e-196 689.1 688 56.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.2e-195 687.2 676 56.1
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 6.0e-195 684.9 680 57.5
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.1e-193 680.6 666 56.6
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 7.3e-193 677.9 689 56.2
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 4.7e-192 675.2 679 55.8
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 6.2e-192 674.9 687 56.5
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 8.1e-192 674.5 675 56.3
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.4e-191 673.7 675 56.4
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.8e-191 673.3 690 54.5
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.4e-191 672.9 676 56.7
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.0e-191 672.2 691 52.5
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 6.8e-191 671.4 657 57.4
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.2e-190 670.6 681 54.5
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.6e-190 669.5 684 55.8
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 9.9e-190 667.5 691 53.4
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 4.9e-189 665.2 678 54.1
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.4e-189 664.8 746 49.5
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.1e-188 664.1 693 54.4
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.4e-188 663.7 692 54.2
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.9e-188 663.3 695 52.5
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 2.4e-188 662.9 696 54.2
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 5.4e-188 661.8 576 61.6
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 7.1e-188 661.4 690 52.5
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.2e-187 660.6 672 55.7
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 2.7e-187 659.4 669 55.5
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.7e-186 656.8 678 53.8
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.7e-186 656.8 695 53.7
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 3.0e-186 656.0 674 55.3
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 6.6e-186 654.8 695 53.8
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.3e-185 652.1 672 53.4
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.6e-185 651.0 690 52.9
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 3.1e-183 646.0 685 53.6
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.5e-182 643.7 688 52.9
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 2.0e-182 643.3 688 52.8
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 7.6e-182 641.3 669 54.7
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.7e-181 640.2 683 52.6
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.2e-181 639.8 678 53.4
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 4.9e-181 638.6 686 52.5
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-180 637.5 684 52.5
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.4e-180 637.1 675 54.1
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 1.2e-179 634.0 649 56.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.1e-179 633.3 691 50.4
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.7e-179 632.9 682 53.2
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 4.6e-179 632.1 675 52.0
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 3.3e-177 625.9 717 51.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 7.3e-177 624.8 500 64.0
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 3.8e-173 612.5 676 52.2
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 6.4e-173 611.7 504 64.5
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 7.1e-172 608.2 683 54.3
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 4.5e-166 589.0 668 51.9
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.5e-166 589.0 573 57.8
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.2e-165 586.6 487 63.4
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 1.0e-162 577.8 673 49.2
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.9e-161 573.5 675 48.9
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.6e-160 570.5 510 60.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 5.3e-159 565.5 673 49.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.3e-154 550.1 663 49.9
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 9.7e-145 518.1 574 49.8
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 9.1e-143 511.5 515 56.5
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.7e-141 507.3 659 46.1
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.7e-136 489.6 493 56.2
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 9.4e-132 474.9 683 41.0
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.5e-124 451.1 416 58.9
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.4e-111 407.9 653 42.0
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.7e-104 384.4 658 39.7
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 3.7e-104 383.3 400 54.2
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 2.0e-94 350.9 658 34.8
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 3.1e-90 337.0 629 34.7
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 6.4e-72 276.2 258 56.6
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 4.2e-71 273.5 407 39.6
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.1e-70 271.2 492 38.8
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 6.9e-58 229.6 418 35.2
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.0e-40 172.6 196 46.9
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 9.0e-34 149.4 98 70.4
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.7e-32 145.2 377 29.2
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.5e-32 143.3 110 69.1
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 4.3e-28 130.6 87 69.0
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-27 129.0 237 36.3
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 1.2e-25 122.5 157 48.4
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.6e-22 110.9 180 38.9
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 2.6e-20 104.8 95 58.9
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 4.1e-18 97.4 74 70.3
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 9.4e-15 86.3 68 61.8
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 9.4e-15 86.3 70 60.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.5e-12 79.0 62 61.3


User provided reference genes

Program Settings