Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.2e-22 109.0 58 100.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.4e-18 94.7 57 87.7
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.4e-18 94.7 57 87.7
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.2e-18 94.4 53 92.5
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.2e-18 94.4 53 92.5
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.2e-18 94.4 53 92.5
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 5.4e-18 93.6 53 90.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.4e-18 93.6 57 86.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 7.0e-18 93.2 53 92.5
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 86.0
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 86.0
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 84.2
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 84.2
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 7.0e-18 93.2 53 92.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 84.2
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 7.0e-18 93.2 57 84.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 7.0e-18 93.2 53 92.5
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 9.2e-18 92.8 57 84.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.2e-18 92.8 57 84.2
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.2e-17 92.4 53 90.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.6e-17 92.0 51 94.1
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.6e-17 92.0 57 84.2
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.6e-17 92.0 57 86.0
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.6e-17 92.0 49 98.0
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-17 91.7 57 84.2
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.7e-17 91.3 57 84.2
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 2.7e-17 91.3 57 84.2
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.7e-17 91.3 49 98.0
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-17 90.9 57 82.5
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-17 90.9 57 82.5
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 3.5e-17 90.9 57 82.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.5e-17 90.9 57 82.5
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 3.5e-17 90.9 57 82.5
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 4.6e-17 90.5 57 82.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.6e-17 90.5 52 88.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.6e-17 90.5 49 98.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 4.6e-17 90.5 57 80.7
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 4.6e-17 90.5 57 84.2
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 6.0e-17 90.1 57 82.5
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 6.0e-17 90.1 57 82.5
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 6.0e-17 90.1 57 80.7
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 6.0e-17 90.1 53 90.6
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 7.8e-17 89.7 57 82.5
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 7.8e-17 89.7 57 80.7
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 7.8e-17 89.7 53 86.8
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.8e-17 89.7 53 86.8
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.0e-16 89.4 57 82.5
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 1.0e-16 89.4 57 82.5
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.3e-16 89.0 53 88.7
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.3e-16 89.0 57 82.5
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.3e-16 89.0 57 80.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.3e-16 89.0 57 82.5
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.3e-16 89.0 57 80.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.7e-16 88.6 52 86.5
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.7e-16 88.6 57 80.7
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.7e-16 88.6 57 78.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.7e-16 88.6 53 83.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 2.3e-16 88.2 57 78.9
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.3e-16 88.2 53 86.8
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.3e-16 88.2 57 77.2
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.3e-16 88.2 57 77.2
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 3.0e-16 87.8 52 90.4
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.0e-16 87.8 57 80.7
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.0e-16 87.8 53 86.8
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.9e-16 87.4 47 95.7
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 3.9e-16 87.4 57 80.7
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.9e-16 87.4 57 80.7
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 5.0e-16 87.0 57 78.9
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.0e-16 87.0 50 92.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 6.6e-16 86.7 57 78.9
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 6.6e-16 86.7 53 86.8
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 6.6e-16 86.7 57 77.2
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 6.6e-16 86.7 57 78.9
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 8.6e-16 86.3 57 78.9
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 8.6e-16 86.3 53 84.9
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.6e-16 86.3 49 91.8
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-15 85.9 51 86.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.1e-15 85.9 50 92.0
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.5e-15 85.5 53 84.9
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.5e-15 85.5 49 87.8
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.9e-15 85.1 53 83.0
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.9e-15 85.1 57 73.7
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 2.5e-15 84.7 53 83.0
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.5e-15 84.7 46 93.5
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.5e-15 84.7 55 80.0
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 3.3e-15 84.3 53 79.2
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 3.3e-15 84.3 53 79.2
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 3.3e-15 84.3 57 75.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 4.3e-15 84.0 57 78.9
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 4.3e-15 84.0 57 78.9
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.3e-15 84.0 49 87.8
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.3e-15 84.0 53 84.9
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 4.3e-15 84.0 57 77.2
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.6e-15 83.6 57 75.4
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 5.6e-15 83.6 57 73.7
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 9.5e-15 82.8 57 75.4
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.5e-15 82.8 49 87.8
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 9.5e-15 82.8 51 82.4
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 77.2
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 77.2
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 77.2
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 77.2
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 71.9
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.2e-14 82.4 57 77.2
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 2.1e-14 81.6 50 84.0
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 6.2e-14 80.1 55 72.7
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.4e-13 79.0 57 70.2
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.8e-13 78.6 53 69.8
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.3e-13 78.2 49 81.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 3.1e-13 77.8 49 79.6
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.0e-13 77.4 45 82.2
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 5.2e-13 77.0 49 79.6
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.8e-13 76.6 49 77.6
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 8.9e-13 76.3 49 75.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.5e-12 75.5 49 77.6
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.5e-12 75.5 47 80.9
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.5e-12 75.5 49 77.6
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.5e-12 75.5 50 76.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 2.0e-12 75.1 49 77.6
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.6e-12 74.7 49 75.5
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.4e-12 73.9 51 72.5
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 7.5e-12 73.2 49 73.5
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.7e-11 72.0 48 75.0
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 2.2e-11 71.6 49 73.5
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 6.4e-11 70.1 49 71.4
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 8.3e-11 69.7 49 71.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.9e-10 68.6 41 85.4
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.1e-09 65.1 53 71.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.9e-07 58.5 37 73.0
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.1e-06 55.1 30 90.0


User provided reference genes

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