Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 2.3e-266 921.8 496 100.0
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 2.8e-163 579.3 516 64.5
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.8e-154 550.1 512 66.8
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 7.6e-153 544.7 511 65.9
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 2.1e-150 536.6 514 66.3
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 7.6e-145 518.1 511 58.9
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.8e-138 496.9 516 57.6
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 5.3e-138 495.4 528 61.0
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.6e-137 493.0 514 59.1
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 5.8e-137 491.9 520 60.6
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 4.2e-135 485.7 508 57.7
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 6.0e-134 481.9 530 56.2
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 1.1e-132 477.6 518 58.1
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 8.1e-131 471.5 457 61.7
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.9e-130 468.4 505 58.0
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 2.6e-129 466.5 505 58.2
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.6e-129 466.5 505 58.2
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 7.9e-126 454.9 507 56.6
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 3.0e-125 453.0 499 56.5
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 8.7e-125 451.4 519 53.4
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 2.5e-124 449.9 535 54.0
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 4.8e-123 445.7 499 56.3
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 8.2e-123 444.9 529 53.5
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.1e-122 444.5 528 56.6
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.4e-122 444.1 514 53.5
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.0e-120 438.0 508 53.1
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.2e-120 436.8 510 55.9
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.9e-120 436.4 508 53.1
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 3.8e-120 436.0 565 51.3
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.1e-119 434.5 511 53.8
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 1.4e-119 434.1 557 51.2
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.2e-119 433.0 505 56.0
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 3.2e-119 433.0 556 50.4
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 1.6e-118 430.6 504 53.0
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 4.6e-118 429.1 525 51.6
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 5.1e-117 425.6 522 51.1
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 1.9e-116 423.7 523 53.3
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 3.3e-116 422.9 542 51.7
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 5.7e-116 422.2 533 52.2
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 2.1e-115 420.2 515 53.8
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 2.1e-115 420.2 437 60.2
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 2.1e-115 420.2 526 51.7
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 3.7e-115 419.5 517 52.4
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 6.3e-115 418.7 526 52.3
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 8.2e-115 418.3 478 55.2
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.8e-114 417.2 537 51.0
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 2.4e-114 416.8 511 52.6
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 2.4e-114 416.8 529 53.1
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.2e-113 414.5 542 53.1
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 3.4e-113 412.9 437 56.1
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 5.9e-113 412.1 523 52.4
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 5.9e-113 412.1 535 50.8
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 7.6e-113 411.8 516 51.0
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 1.7e-112 410.6 472 55.1
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 3.2e-111 406.4 524 49.6
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 7.2e-111 405.2 506 54.7
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 1.2e-110 404.4 469 54.4
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.6e-110 404.1 531 50.5
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.6e-110 404.1 480 52.7
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.6e-110 402.5 480 52.9
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 1.0e-109 401.4 532 51.1
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.3e-109 400.2 518 51.4
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 1.5e-108 397.5 445 54.8
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 4.3e-108 396.0 486 51.6
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 3.7e-107 392.9 507 52.9
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 3.7e-107 392.9 547 51.9
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 3.7e-107 392.9 527 49.3
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 6.3e-107 392.1 497 50.3
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 1.1e-106 391.3 528 49.8
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 5.3e-106 389.0 526 48.5
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.2e-105 387.9 518 50.8
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.5e-105 387.5 537 48.4
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 1.9e-103 380.6 521 48.2
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.2e-102 377.9 563 46.2
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.1e-100 371.3 504 49.4
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 1.1e-100 371.3 435 54.9
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.5e-100 370.9 481 50.5
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 1.4e-98 364.4 512 48.6
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.4e-98 363.6 473 54.1
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 4.5e-97 359.4 507 50.1
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 1.0e-96 358.2 529 48.4
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 5.0e-96 355.9 520 47.3
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 7.2e-95 352.1 518 47.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 7.2e-95 352.1 515 47.2
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 7.2e-95 352.1 419 53.5
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.6e-94 350.9 501 49.5
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 1.6e-94 350.9 466 52.1
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 4.7e-94 349.4 469 51.0
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 6.1e-94 349.0 474 52.7
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.0e-93 346.7 531 45.8
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.7e-91 340.9 473 49.7
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 8.2e-91 338.6 509 49.3
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 4.2e-87 326.2 446 49.1
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 2.3e-85 320.5 491 46.8
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 4.0e-85 319.7 448 48.7
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.1e-82 311.6 580 41.9
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.8e-82 310.8 295 60.3
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 5.3e-82 309.3 473 45.2
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.1e-78 297.4 530 42.1
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.0e-77 295.0 304 57.2
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 3.0e-77 293.5 291 57.4
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 8.8e-77 292.0 505 43.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 5.7e-76 289.3 293 56.7
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 4.0e-69 266.5 586 38.2
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.7e-67 261.2 334 49.7
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 8.6e-64 248.8 288 52.1
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 3.0e-61 240.4 364 45.3
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.7e-59 233.4 504 35.1
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 5.4e-58 229.6 529 39.7
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 6.6e-56 222.6 154 73.4
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 1.9e-55 221.1 442 36.9
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 2.7e-49 200.7 299 48.2
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 4.3e-47 193.4 518 35.3
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 4.9e-43 179.9 142 64.8
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.3e-39 167.2 183 55.2
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.2e-35 154.5 172 57.6
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 1.3e-32 145.2 129 59.7
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.1e-31 142.1 94 72.3
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.8e-30 137.5 441 31.7
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.4e-29 135.2 541 29.4
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.0e-29 133.7 154 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 2.2e-27 127.9 167 43.1
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.7e-24 118.2 157 41.4
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 8.7e-24 115.9 107 56.1
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.9e-23 114.8 72 76.4
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.8e-21 108.2 72 73.6
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 4.2e-18 97.1 90 61.1
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.9e-15 88.2 416 27.4
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.3e-15 87.4 57 73.7
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-11 73.9 93 38.7
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 3.5e-09 67.4 141 33.3
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 6.0e-09 66.6 120 30.8
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 6.0e-09 66.6 123 31.7
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 7.9e-09 66.2 125 31.2
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.8e-08 65.1 128 31.2
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 1.8e-08 65.1 128 31.2
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 1.8e-08 65.1 83 37.3
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 1.8e-08 65.1 123 29.3
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 2.3e-08 64.7 130 30.8
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.0e-08 64.3 109 31.2
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 6.7e-08 63.2 125 28.0
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 6.7e-08 63.2 139 28.8
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 8.7e-08 62.8 125 29.6
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.1e-07 62.4 128 28.9
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 1.1e-07 62.4 112 31.2
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.1e-07 62.4 112 31.2
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.5e-07 62.0 123 30.1
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.5e-07 62.0 123 30.1
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 1.5e-07 62.0 112 32.1
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 1.5e-07 62.0 123 29.3
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.5e-07 62.0 120 29.2
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 2.5e-07 61.2 109 30.3
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 2.5e-07 61.2 109 28.4
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 3.3e-07 60.8 112 30.4
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 5.6e-07 60.1 128 30.5
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 7.4e-07 59.7 123 28.5
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 7.4e-07 59.7 109 29.4
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 9.6e-07 59.3 134 27.6
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 9.6e-07 59.3 109 28.4
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 9.6e-07 59.3 109 28.4
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.6e-06 58.5 46 63.0
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.1e-06 58.2 103 31.1
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 2.1e-06 58.2 98 30.6
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 2.1e-06 58.2 149 27.5
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 2.1e-06 58.2 149 27.5
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 2.1e-06 58.2 109 28.4
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 3.7e-06 57.4 109 26.6
Haze_11686 Corylus avellana HOM05D000371 ORTHO05D001484 3.7e-06 57.4 121 35.5
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 3.7e-06 57.4 117 32.5
Gohir.A05G007100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 3.7e-06 57.4 109 28.4
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 3.7e-06 57.4 98 31.6
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 3.7e-06 57.4 122 30.3
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 4.8e-06 57.0 109 27.5
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 8.2e-06 56.2 112 30.4
Hund05592 Selenicereus undatus HOM05D000371 ORTHO05D001484 8.2e-06 56.2 119 37.0
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 8.2e-06 56.2 125 28.0


User provided reference genes

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