Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 0.0e+00 1282.3 688 100.0
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 5.6e-255 884.4 689 68.2
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 2.3e-253 879.0 690 69.6
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.1e-250 868.2 676 68.8
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 8.1e-246 854.0 696 66.8
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.3e-243 846.7 687 66.1
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.0e-232 810.4 697 65.3
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 5.6e-231 804.7 710 61.8
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.8e-230 801.6 696 64.7
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.8e-229 799.7 669 64.0
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 2.4e-226 789.3 696 64.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 6.0e-225 784.6 689 63.0
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 9.6e-223 777.3 671 62.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 3.7e-222 775.4 683 62.2
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.5e-220 770.0 690 62.2
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.3e-219 766.9 674 63.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.7e-219 766.5 692 61.3
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 6.4e-219 764.6 694 61.2
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.6e-214 750.0 859 51.7
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.3e-213 745.0 686 59.8
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.4e-212 742.3 689 59.5
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.3e-211 740.3 692 60.1
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.2e-210 735.3 683 59.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 2.1e-209 733.0 685 59.1
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.3e-208 730.3 691 60.6
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.1e-208 728.4 632 61.7
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 5.1e-208 728.4 691 59.5
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 4.8e-206 721.8 687 59.7
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 8.2e-206 721.1 689 58.2
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 8.2e-206 721.1 690 59.0
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.5e-204 715.3 689 58.1
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.9e-203 712.6 689 58.1
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-202 710.7 682 59.1
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.4e-197 693.7 688 56.7
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.4e-197 693.0 690 57.2
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 4.7e-193 678.7 694 56.2
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.0e-192 676.0 691 55.4
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.6e-191 672.9 679 57.3
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 4.1e-189 665.6 673 55.9
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 3.4e-188 662.5 688 55.8
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 3.4e-188 662.5 758 53.8
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.5e-186 656.4 664 56.5
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 2.1e-185 653.3 684 56.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.1e-185 653.3 682 56.2
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 3.0e-184 649.4 695 54.7
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 3.9e-184 649.0 711 52.9
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.0e-183 646.7 683 55.3
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 3.3e-183 646.0 705 55.6
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.2e-182 643.3 689 55.4
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 2.2e-182 643.3 691 54.8
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.4e-181 640.6 714 52.1
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 2.6e-180 636.3 688 53.9
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 3.5e-180 636.0 684 53.8
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.3e-179 634.0 685 53.3
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.7e-179 633.6 685 53.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 2.9e-179 632.9 670 53.9
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 5.0e-179 632.1 652 56.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 6.5e-179 631.7 617 57.5
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.5e-178 630.6 676 54.6
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.5e-178 630.6 586 59.2
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 2.5e-178 629.8 676 54.7
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 5.5e-178 628.6 680 54.0
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.1e-177 626.7 676 54.4
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.6e-177 625.9 662 54.7
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 5.2e-176 622.1 690 52.6
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.5e-175 620.5 597 59.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 3.3e-175 619.4 621 58.0
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 5.7e-175 618.6 664 55.1
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 6.3e-174 615.1 731 52.1
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.1e-173 614.4 691 52.8
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.1e-173 614.4 663 54.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-173 614.4 664 55.0
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 2.0e-172 610.1 664 53.9
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 7.7e-172 608.2 676 53.7
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.0e-171 607.8 664 53.9
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.3e-171 607.4 701 52.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 2.5e-170 603.2 676 53.4
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 4.2e-170 602.4 682 52.8
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.2e-169 600.9 674 52.4
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.2e-169 600.9 684 52.0
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.6e-169 599.4 694 53.7
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 6.1e-169 598.6 618 55.8
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.4e-168 597.4 690 51.0
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.0e-168 595.9 694 53.3
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.2e-167 594.3 735 49.9
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 9.8e-167 591.3 678 52.2
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.2e-166 590.1 686 53.2
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 2.4e-165 586.6 691 50.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 5.9e-164 582.0 701 51.9
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.0e-163 578.9 670 53.1
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.9e-162 577.0 714 49.6
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.3e-162 576.2 697 49.8
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 4.2e-162 575.9 670 53.0
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-161 574.3 671 53.7
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 2.1e-161 573.5 670 52.8
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 6.8e-160 568.5 615 56.3
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.5e-159 567.4 589 53.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.3e-158 564.3 712 49.3
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 4.5e-156 555.8 699 49.9
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.9e-155 553.1 685 49.8
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 9.5e-154 548.1 626 50.3
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.6e-153 547.4 733 47.6
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.7e-147 527.3 712 50.6
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.5e-146 524.2 673 47.7
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.0e-143 513.8 673 49.5
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.0e-143 513.8 628 48.4
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 2.9e-142 510.0 708 48.4
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.1e-138 498.0 598 49.0
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 6.4e-134 482.3 695 45.6
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 2.1e-132 477.2 650 45.4
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 4.6e-132 476.1 628 45.9
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.3e-131 474.6 689 44.4
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.4e-128 464.5 766 41.6
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 8.7e-123 445.3 665 44.8
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.9e-115 419.9 681 41.6
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.3e-110 404.8 435 55.2
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 8.7e-107 392.1 522 47.3
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 4.8e-97 359.8 613 41.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.4e-96 357.5 596 41.9
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.5e-95 354.8 641 39.2
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 3.2e-77 293.9 660 34.5
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 7.7e-71 272.7 590 35.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 8.5e-70 269.2 662 32.6
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.1e-64 252.3 690 33.0
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-60 238.8 323 47.1
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.5e-55 220.7 236 54.7
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.7e-49 201.8 180 61.7
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.4e-48 196.8 223 52.0
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.7e-47 194.5 503 31.8
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 6.6e-46 189.9 183 58.5
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 4.7e-36 157.1 708 27.5
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 6.6e-30 136.7 131 58.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.6e-28 131.0 134 53.7
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.7e-25 122.1 105 52.4
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 1.2e-23 115.9 99 62.6
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 2.3e-22 111.7 640 25.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.7e-17 94.4 70 64.3
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.8e-11 75.5 106 47.2
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 3.1e-11 74.7 206 25.7
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.2e-10 72.8 59 61.0
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.4e-09 67.0 91 45.1
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 2.4e-08 65.1 125 36.0
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 2.4e-08 65.1 125 36.0
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 2.4e-08 65.1 125 36.0


User provided reference genes

Program Settings