Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2836 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-51 205.3 98 100.0
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-46 189.5 98 91.8
Atru.chr1.1754 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-25 119.8 89 59.6
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-25 119.0 98 53.1
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-24 114.8 98 52.0
Atru.chr2.712 Acer truncatum HOM05D000003 ORTHO05D000022 7.2e-23 110.5 69 68.1
Atru.chr4.899 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-22 109.4 95 50.5
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-22 109.0 92 48.9
Atru.chr12.1173 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-22 108.2 96 52.1
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-22 107.8 92 47.8
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-22 107.8 98 49.0
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-22 107.5 92 53.3
Atru.chr1.3262 Acer truncatum HOM05D000003 ORTHO05D000022 8.0e-22 107.1 96 52.1
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-21 105.5 95 50.5
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-21 105.1 95 51.6
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-20 102.1 95 50.5
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-20 101.3 93 46.2
Atru.chr4.1024 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-20 100.9 95 48.4
Atru.chr6.2380 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-20 100.5 91 49.5
Atru.chr4.458 Acer truncatum HOM05D000003 ORTHO05D000022 9.7e-20 100.1 92 50.0
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-19 98.6 92 48.9
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-19 97.8 96 44.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-19 97.4 97 45.4
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-19 97.4 92 46.7
Atru.chr2.1642 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-18 96.3 98 42.9
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-18 95.5 92 47.8
Atru.chr8.30 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-18 95.5 95 46.3
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-18 95.1 92 47.8
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-18 94.4 92 43.5
Atru.chr5.2141 Acer truncatum HOM05D000003 ORTHO05D000022 7.0e-18 94.0 92 42.4
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-17 92.4 92 45.7
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-17 92.0 92 46.7
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-17 92.0 75 49.3
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-17 91.7 92 43.5
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-17 90.9 92 44.6
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-17 90.9 92 45.7
Atru.chr7.170 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-16 90.1 90 43.3
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-16 89.0 92 42.4
Atru.chr1.1867 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-16 89.0 74 51.4
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-16 88.6 75 53.3
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-16 88.2 96 43.8
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-16 87.8 94 40.4
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-16 87.8 92 41.3
Atru.chr1.1759 Acer truncatum HOM05D000003 ORTHO05D000022 6.5e-16 87.4 61 59.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-16 87.4 98 41.8
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 6.5e-16 87.4 91 45.1
Atru.chr13.2391 Acer truncatum HOM05D000003 ORTHO05D000022 8.5e-16 87.0 96 42.7
Atru.chr8.1100 Acer truncatum HOM05D000003 ORTHO05D000022 8.5e-16 87.0 96 40.6
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-15 86.7 92 41.3
Atru.chr8.1133 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-15 86.3 94 39.4
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-15 85.9 92 39.1
Atru.chr5.1023 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-15 85.5 96 39.6
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-15 85.5 97 39.2
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-15 85.1 92 43.5
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 4.2e-15 84.7 96 38.5
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-15 84.7 92 42.4
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 7.2e-15 84.0 95 36.8
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 7.2e-15 84.0 91 42.9
Atru.chr2.2857 Acer truncatum HOM05D000003 ORTHO05D000022 9.4e-15 83.6 93 37.6
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 9.4e-15 83.6 96 38.5
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-14 83.2 96 40.6
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-14 83.2 91 42.9
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-14 83.2 85 38.8
Atru.chr5.1030 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-14 82.0 89 39.3
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-14 82.0 98 43.9
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 3.6e-14 81.6 94 37.2
Atru.chr1.2517 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-14 80.5 86 43.0
Atru.chr9.518 Acer truncatum HOM05D000003 ORTHO05D000022 8.0e-14 80.5 84 45.2
Atru.chr10.427 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-13 79.7 84 42.9
Atru.chr11.90 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-13 79.7 65 52.3
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-13 79.3 96 37.5
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-13 78.6 94 36.2
Atru.chr1.2471 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-13 78.2 75 46.7
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-13 77.8 94 36.2
Atru.chr5.1039 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-13 77.8 74 40.5
Atru.chr1.276 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-13 77.0 94 34.0
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-13 77.0 94 35.1
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-13 77.0 97 41.2
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-12 76.6 95 35.8
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-12 76.3 91 37.4
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-12 75.5 73 46.6
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-12 75.1 97 34.0
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-12 75.1 97 34.0
Atru.chr5.2373 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-12 74.7 67 47.8
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-12 74.3 94 34.0
Atru.chr8.1561 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-12 74.3 49 63.3
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 7.5e-12 73.9 96 33.3
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 9.8e-12 73.6 85 37.6
Atru.chr10.1106 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-11 73.2 92 33.7
Atru.chr3.1879 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-11 73.2 73 38.4
Atru.chr13.1938 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-11 72.8 81 39.5
Atru.chr6.589 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-11 72.4 72 34.7
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 2.8e-11 72.0 86 34.9
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.8e-11 72.0 86 37.2
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-11 71.2 95 34.7
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 4.8e-11 71.2 91 34.1
Atru.chr3.1552 Acer truncatum HOM05D000003 ORTHO05D000022 8.3e-11 70.5 77 35.1
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-10 70.1 94 30.9
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-10 70.1 91 34.1
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-10 70.1 91 34.1
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-10 69.7 91 31.9
Prupe.1G446500 Prunus persica HOM05D000003 ORTHO05D000022 1.8e-10 69.3 93 32.3
Atru.chr4.1478 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-10 68.2 90 30.0
Atru.chr8.1416 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-10 68.2 85 35.3
FvH4_2g06731 Fragaria vesca HOM05D000003 ORTHO05D020649 4.1e-10 68.2 101 37.6
RcHm_v2.0_Chr7g0225251 Rosa chinensis HOM05D000003 ORTHO05D000022 4.1e-10 68.2 84 38.1
Atru.chr3.2364 Acer truncatum HOM05D000003 ORTHO05D000022 5.4e-10 67.8 82 36.6
Prupe.4G174500 Prunus persica HOM05D000003 ORTHO05D000022 5.4e-10 67.8 99 32.3
Prupe.3G010000 Prunus persica HOM05D000003 ORTHO05D000022 9.1e-10 67.0 99 31.3
Atru.chr3.2588 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-09 66.6 64 37.5
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 2.7e-09 65.5 91 30.8
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 2.7e-09 65.5 90 33.3
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 3.5e-09 65.1 94 38.3
VMungo0540G1625 Vigna mungo HOM05D000062 ORTHO05D000043 3.5e-09 65.1 93 35.5
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-09 64.7 65 44.6
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-09 64.7 84 38.1
FvH4_7g26563 Fragaria vesca HOM05D000003 ORTHO05D000022 5.9e-09 64.3 86 31.4
CARHR220690 Cardamine hirsuta HOM05D000003 ORTHO05D000022 7.7e-09 63.9 91 31.9
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 7.7e-09 63.9 96 34.4
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 7.7e-09 63.9 96 31.2
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 7.7e-09 63.9 84 35.7
RcHm_v2.0_Chr2g0152401 Rosa chinensis HOM05D000003 ORTHO05D000022 1.0e-08 63.5 96 31.2
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 1.0e-08 63.5 92 32.6
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.3e-08 63.2 92 32.6
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 2.2e-08 62.4 91 37.4
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.9e-08 62.0 91 35.2
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.9e-08 62.0 84 33.3
RcHm_v2.0_Chr3g0486471 Rosa chinensis HOM05D000003 ORTHO05D000022 6.5e-08 60.8 94 33.0
RcHm_v2.0_Chr5g0016411 Rosa chinensis HOM05D000003 ORTHO05D000022 8.5e-08 60.5 84 31.0
Dinv08373 Davidia involucrata HOM05D000003 ORTHO05D029248 1.1e-07 60.1 63 39.7
RcHm_v2.0_Chr1g0319821 Rosa chinensis HOM05D000003 ORTHO05D000022 1.1e-07 60.1 81 37.0
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-07 59.7 85 36.5
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-07 59.7 85 36.5
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 1.9e-07 59.3 100 36.0
Lj2C63T5 Lonicera japonica HOM05D016027 ORTHO05D000022 1.9e-07 59.3 92 31.5
FAN24G0855 Fragaria x ananassa HOM05D000003 ORTHO05D000022 2.5e-07 58.9 70 34.3
FvH4_5g34262 Fragaria vesca HOM05D000003 ORTHO05D000022 3.2e-07 58.5 95 34.7
Lj5g0004077 Lotus japonicus HOM05D000003 ORTHO05D000022 3.2e-07 58.5 89 32.6
Atru.chr6.775 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-07 58.2 54 40.7
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 56.6 94 26.6
RcHm_v2.0_Chr1g0331331 Rosa chinensis HOM05D000003 ORTHO05D000022 1.2e-06 56.6 83 33.7
Atru.chr12.1756 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-06 56.2 53 39.6
FvH4_3g23491 Fragaria vesca HOM05D000279 ORTHO05D000957 2.1e-06 55.8 93 28.0
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 2.1e-06 55.8 73 35.6
RcHm_v2.0_Chr7g0224511 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-06 55.8 84 29.8
TPR.G544 Trifolium pratense HOM05D008718 ORTHO05D010957 2.1e-06 55.8 89 31.5
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.5 54 40.7
Atru.chr2.2310 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-06 55.1 62 40.3
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-06 54.7 66 30.3
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 4.7e-06 54.7 91 30.8
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 4.7e-06 54.7 96 30.2
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 6.1e-06 54.3 93 32.3
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 6.1e-06 54.3 93 32.3
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 8.0e-06 53.9 92 32.6
RcHm_v2.0_Chr4g0426191 Rosa chinensis HOM05D000003 ORTHO05D000022 8.0e-06 53.9 83 31.3


User provided reference genes

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