Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 1.0e-148 530.0 259 100.0
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 4.7e-98 361.7 227 77.1
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 3.9e-92 342.0 257 66.5
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.4e-89 333.6 248 65.3
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 6.0e-85 318.2 235 66.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 7.8e-85 317.8 252 61.9
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 3.0e-84 315.8 252 62.3
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 6.6e-84 314.7 256 61.7
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 4.8e-82 308.5 243 63.0
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 5.3e-81 305.1 250 58.0
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 6.9e-81 304.7 255 58.4
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.5e-80 303.5 235 62.6
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 3.4e-80 302.4 251 57.4
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 5.8e-80 301.6 248 60.1
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.3e-79 300.4 252 57.9
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 6.4e-79 298.1 231 63.6
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.4e-79 298.1 252 59.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.4e-79 298.1 252 58.7
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 3.2e-78 295.8 256 55.9
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 3.2e-78 295.8 267 58.4
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 4.2e-78 295.4 246 61.8
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 4.2e-78 295.4 252 57.1
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 4.2e-78 295.4 254 59.4
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 6.7e-76 288.1 244 56.6
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 6.7e-76 288.1 251 54.2
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 8.7e-76 287.7 245 57.1
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.5e-75 287.0 257 57.2
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 3.3e-75 285.8 256 55.5
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 3.3e-75 285.8 228 59.2
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.6e-74 283.5 239 57.7
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 2.8e-74 282.7 260 54.2
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 2.8e-74 282.7 242 56.2
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.1e-73 280.8 255 56.9
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.1e-73 280.8 240 57.9
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.4e-73 280.4 241 56.0
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 3.1e-73 279.3 252 54.4
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.2e-72 277.3 235 60.9
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.5e-72 276.9 252 54.0
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.5e-72 276.9 252 54.4
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 2.0e-72 276.6 240 56.2
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 2.0e-72 276.6 252 53.6
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 3.4e-72 275.8 242 55.8
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.4e-72 275.8 239 56.5
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 3.4e-72 275.8 244 54.5
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 4.5e-72 275.4 247 53.0
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 4.5e-72 275.4 246 52.4
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 1.7e-71 273.5 240 55.8
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 2.2e-71 273.1 253 51.8
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 3.8e-71 272.3 251 53.8
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 3.8e-71 272.3 253 54.2
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.4e-70 270.4 241 55.2
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 9.3e-70 267.7 245 52.7
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.3e-68 263.8 242 52.5
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.3e-68 263.1 238 55.9
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 6.7e-68 261.5 244 53.3
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 2.5e-67 259.6 244 52.9
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 2.8e-66 256.1 244 52.9
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 4.8e-66 255.4 244 53.3
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 1.8e-65 253.4 243 50.2
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-64 250.4 232 53.9
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 3.4e-64 249.2 252 51.2
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 7.6e-64 248.1 243 49.4
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 2.2e-63 246.5 252 53.6
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 6.5e-63 245.0 249 48.6
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.5e-62 243.0 227 52.9
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.5e-62 243.0 227 52.9
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 7.1e-62 241.5 243 47.7
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.6e-61 240.4 232 52.2
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.6e-61 240.4 241 47.7
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 3.5e-61 239.2 235 48.5
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 7.9e-61 238.0 227 52.4
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 7.9e-61 238.0 227 52.4
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 7.9e-61 238.0 241 47.3
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 1.0e-60 237.7 256 50.0
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 2.3e-60 236.5 226 52.2
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 3.9e-60 235.7 228 51.3
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 8.7e-60 234.6 227 50.7
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.3e-59 232.6 232 51.7
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 5.7e-59 231.9 228 50.9
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 7.4e-59 231.5 231 50.6
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.3e-58 230.7 177 65.0
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 4.8e-58 228.8 230 50.9
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.1e-57 227.6 226 50.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.4e-57 227.3 199 57.3
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.1e-57 226.1 229 52.0
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 5.3e-57 225.3 243 45.7
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 1.5e-56 223.8 237 46.4
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.7e-55 220.3 241 46.9
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 1.9e-54 216.9 228 52.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.7e-53 213.0 169 58.6
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 5.1e-52 208.8 172 58.1
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.3e-51 206.1 228 48.2
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 4.3e-51 205.7 274 43.8
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.3e-50 204.1 228 45.2
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 3.7e-50 202.6 228 43.4
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 4.1e-49 199.1 160 61.9
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 1.1e-46 191.0 299 36.1
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.6e-45 187.2 297 36.0
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 2.7e-45 186.4 168 54.8
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.8e-41 173.7 271 37.6
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 5.9e-40 168.7 152 52.6
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 2.9e-39 166.4 254 40.6
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 3.0e-36 156.4 231 35.5
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 3.0e-36 156.4 148 54.1
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 7.4e-35 151.8 148 52.0
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.1e-33 147.9 148 49.3
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 8.5e-31 138.3 161 44.7
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 5.5e-30 135.6 92 70.7
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.0e-28 131.3 88 71.6
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 4.5e-24 115.9 348 25.9
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 2.5e-22 110.2 103 52.4
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.2e-22 109.8 83 59.0
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 4.2e-22 109.4 149 39.6
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 6.1e-21 105.5 110 51.8
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.0e-20 104.8 66 72.7
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 4.0e-20 102.8 117 41.0
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 6.8e-20 102.1 160 41.9
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 4.4e-19 99.4 72 65.3
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 9.8e-19 98.2 88 51.1
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 9.1e-17 91.7 62 67.7
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 8.6e-15 85.1 83 44.6


User provided reference genes

Program Settings