Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 2.2e-120 435.6 217 100.0
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 6.3e-104 380.9 218 87.2
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 9.1e-103 377.1 217 85.7
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 7.7e-102 374.0 216 85.2
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 2.2e-101 372.5 216 85.2
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 6.5e-101 370.9 216 82.9
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 6.5e-101 370.9 217 83.9
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 8.5e-101 370.5 215 83.3
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 1.9e-100 369.4 216 83.8
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 2.5e-100 369.0 214 83.6
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 2.5e-100 369.0 218 82.6
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 3.2e-100 368.6 217 83.9
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 1.2e-99 366.7 215 81.9
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 1.6e-99 366.3 215 81.9
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 1.6e-99 366.3 215 81.9
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.1e-99 365.9 217 83.4
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 2.1e-99 365.9 213 85.4
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.7e-99 365.5 217 82.9
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 3.6e-99 365.2 216 81.9
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 6.1e-99 364.4 217 83.9
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 6.1e-99 364.4 215 81.4
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.0e-99 364.0 216 81.5
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.4e-98 363.2 216 81.0
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.8e-98 362.8 211 82.5
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 5.2e-98 361.3 221 81.0
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 8.8e-98 360.5 212 84.9
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 8.8e-98 360.5 213 81.7
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 8.8e-98 360.5 216 81.0
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.2e-97 360.1 216 80.6
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 80.6
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 2.6e-97 359.0 221 80.1
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 3.4e-97 358.6 216 80.1
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 7.5e-97 357.5 215 79.5
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 7.5e-97 357.5 215 81.4
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 7.5e-97 357.5 213 81.7
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 1.3e-96 356.7 217 80.6
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 2.8e-96 355.5 212 81.6
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 2.8e-96 355.5 214 82.2
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 3.7e-96 355.1 216 81.5
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 4.9e-96 354.8 212 80.7
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 8.3e-96 354.0 213 81.7
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 8.3e-96 354.0 217 81.1
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 3.1e-95 352.1 217 80.2
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 4.1e-95 351.7 216 80.1
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 5.4e-95 351.3 216 79.6
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 5.4e-95 351.3 232 76.3
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 5.4e-95 351.3 215 79.5
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 9.2e-95 350.5 216 79.6
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 9.2e-95 350.5 218 78.4
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 1.2e-94 350.1 213 78.9
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 2.0e-94 349.4 214 80.8
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 3.5e-94 348.6 214 80.8
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 5.9e-94 347.8 218 78.0
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 1.3e-93 346.7 214 79.4
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.3e-93 346.7 212 77.4
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.3e-93 345.9 211 78.7
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.3e-93 345.9 211 78.7
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 2.9e-93 345.5 217 78.8
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 8.6e-93 344.0 216 78.2
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 2.5e-92 342.4 216 78.7
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 4.3e-92 341.7 209 78.9
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 4.3e-92 341.7 219 78.1
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 4.3e-92 341.7 215 79.1
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 7.3e-92 340.9 217 77.9
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 3.6e-91 338.6 219 77.2
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.6e-91 338.6 217 77.0
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 3.6e-91 338.6 217 77.0
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 3.6e-91 338.6 217 77.0
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 6.1e-91 337.8 216 78.2
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 8.0e-91 337.4 219 77.2
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 1.0e-90 337.0 217 77.9
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.4e-90 336.7 217 76.5
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 1.8e-90 336.3 214 75.7
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 2.3e-90 335.9 212 75.9
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 3.0e-90 335.5 217 76.5
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 3.0e-90 335.5 217 76.5
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 5.2e-90 334.7 218 77.5
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 6.8e-90 334.3 215 76.7
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 1.2e-89 333.6 217 77.0
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 2.6e-89 332.4 217 75.1
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 3.4e-89 332.0 209 76.6
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 4.4e-89 331.6 204 79.4
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 4.4e-89 331.6 216 74.5
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 5.7e-89 331.3 219 75.8
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 1.3e-88 330.1 211 77.7
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 3.0e-85 318.9 213 73.7
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 2.5e-84 315.8 213 75.6
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 3.1e-82 308.9 205 75.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 3.4e-81 305.4 211 70.1
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 2.9e-80 302.4 216 68.5
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 3.7e-80 302.0 217 72.4
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 6.4e-80 301.2 216 69.0
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 7.0e-79 297.7 211 71.6
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 9.2e-79 297.4 206 71.4
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 2.0e-78 296.2 198 72.7
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 8.6e-77 290.8 207 67.1
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 9.5e-76 287.3 193 75.1
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.7e-72 275.4 184 70.1
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 4.9e-72 275.0 212 61.8
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 8.3e-72 274.2 192 72.9
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 7.8e-70 267.7 215 63.3
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 7.8e-70 267.7 198 66.2
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.3e-68 261.9 262 56.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.3e-66 256.1 143 84.6
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 5.2e-66 255.0 149 83.2
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 5.2e-66 255.0 191 67.0
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 5.4e-63 245.0 148 80.4
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.2e-62 243.8 148 81.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 1.3e-61 240.4 146 81.5
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 6.6e-53 211.5 177 58.2
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 1.9e-47 193.4 191 49.2
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 6.0e-46 188.3 102 86.3
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 2.3e-37 159.8 208 45.7
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.8e-26 123.6 85 69.4
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 1.5e-25 120.6 62 88.7
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.1e-23 114.4 68 75.0
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.9e-23 113.6 97 58.8
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 2.5e-23 113.2 87 62.1
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 8.7e-21 104.8 98 56.1
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 4.5e-17 92.4 66 69.7
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 6.1e-14 82.0 142 38.7
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 1.9e-07 60.5 41 68.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.5e-07 60.1 141 28.4
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.2e-07 59.7 141 27.7
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.2e-07 59.7 141 27.7
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 7.2e-07 58.5 141 27.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 27.7


User provided reference genes

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