Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.8e-211 738.4 388 100.0
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 8.0e-166 587.4 399 79.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 5.3e-154 548.1 388 76.0
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 4.5e-153 545.0 400 74.5
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 7.2e-151 537.7 398 73.6
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 3.6e-150 535.4 398 73.4
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 8.0e-150 534.3 391 72.4
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 2.4e-146 522.7 388 75.0
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 9.1e-146 520.8 400 74.0
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.0e-145 519.6 393 73.0
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 4.5e-145 518.5 388 71.4
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 5.0e-144 515.0 384 72.7
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.6e-142 510.0 389 71.2
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 3.4e-140 502.3 396 69.4
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 4.4e-140 501.9 400 68.2
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 5.7e-140 501.5 388 69.3
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.1e-138 497.3 388 69.3
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 2.4e-138 496.1 388 68.8
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 3.1e-138 495.7 389 68.1
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 4.1e-138 495.4 389 69.2
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.4e-138 495.0 389 68.1
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 9.2e-138 494.2 388 68.6
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 5.9e-137 491.5 350 72.9
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.3e-136 490.3 403 68.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 2.3e-136 489.6 391 67.8
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.3e-136 489.6 390 68.2
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 2.9e-136 489.2 397 69.0
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.9e-135 486.5 374 70.3
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.2e-134 483.8 341 73.6
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 6.1e-134 481.5 383 68.4
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 8.0e-134 481.1 380 67.4
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.4e-133 480.3 398 65.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 2.3e-133 479.6 388 66.8
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 6.8e-133 478.0 395 66.3
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 8.9e-133 477.6 399 64.9
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 2.6e-132 476.1 398 65.3
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 3.7e-131 472.2 382 67.0
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 3.7e-131 472.2 376 67.6
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 4.9e-131 471.9 381 67.7
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 6.4e-131 471.5 344 71.8
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.1e-130 470.7 380 66.3
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.4e-130 470.3 400 64.8
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.4e-130 470.3 420 61.9
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 7.0e-130 468.0 355 69.9
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 3.0e-128 462.6 374 66.8
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 3.9e-128 462.2 337 71.5
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 5.0e-128 461.8 396 63.4
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.1e-127 460.7 374 66.0
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.1e-127 460.7 381 65.6
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.5e-127 460.3 395 62.5
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.9e-127 459.9 371 66.6
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 4.3e-127 458.8 307 77.2
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 5.6e-127 458.4 353 69.4
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 9.5e-127 457.6 384 65.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 9.5e-127 457.6 384 65.4
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 2.1e-126 456.4 389 63.8
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 3.6e-126 455.7 391 61.6
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 1.4e-125 453.8 335 70.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 5.2e-125 451.8 381 64.8
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 5.8e-124 448.4 388 63.7
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 7.5e-124 448.0 382 64.4
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 4.1e-122 442.2 380 61.6
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 4.6e-121 438.7 380 65.8
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.3e-120 437.2 387 61.2
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 5.1e-120 435.3 316 69.9
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 8.6e-120 434.5 329 71.1
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 4.3e-119 432.2 319 70.2
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 7.3e-119 431.4 380 64.7
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.2e-118 430.6 410 60.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.6e-118 430.3 405 61.7
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.8e-117 424.9 403 61.3
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.5e-116 423.7 362 62.2
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.7e-115 420.2 309 68.6
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.3e-112 409.8 383 60.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.9e-112 409.1 387 58.7
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.9e-112 409.1 379 59.4
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 5.1e-112 408.7 379 59.1
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 8.6e-112 407.9 306 69.0
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 8.6e-112 407.9 379 59.9
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.1e-111 407.5 388 58.2
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.6e-110 403.7 324 64.8
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.1e-110 403.3 256 79.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 4.7e-110 402.1 323 63.2
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 4.0e-109 399.1 418 55.0
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 6.8e-109 398.3 322 63.7
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 4.4e-108 395.6 321 63.9
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 4.9e-107 392.1 326 66.6
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.3e-104 384.0 323 61.0
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.9e-104 382.5 294 69.4
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.4e-98 363.2 252 72.6
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.4e-98 363.2 311 64.3
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 5.6e-95 352.1 325 58.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.6e-94 350.5 318 62.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 3.8e-91 339.3 354 51.1
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.7e-89 333.2 250 68.4
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 3.0e-88 329.7 313 60.4
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 3.3e-87 326.2 321 58.3
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 2.4e-85 320.1 298 53.4
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.4e-84 316.2 317 50.8
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 3.8e-83 312.8 202 78.7
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.1e-79 301.2 319 52.4
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 3.3e-79 299.7 308 55.5
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.1e-77 294.7 187 80.7
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 2.2e-75 287.0 301 48.2
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.2e-73 281.2 271 60.9
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 7.4e-71 271.9 179 77.7
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 6.3e-70 268.9 255 57.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 9.4e-66 255.0 200 69.0
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.6e-65 254.2 227 60.4
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 1.4e-64 251.1 159 83.6
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 3.9e-64 249.6 253 56.9
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.8e-51 206.5 281 40.2
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.5e-47 194.5 340 42.6
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.2e-43 180.6 286 37.4
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.1e-42 178.3 137 67.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.2e-41 174.9 285 35.1
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.2e-33 148.3 105 74.3
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.4e-32 144.8 232 42.7
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.6e-28 131.3 129 54.3
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 5.5e-26 122.9 84 77.4
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 2.8e-25 120.6 226 40.3
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 6.8e-24 115.9 84 72.6
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.6e-12 78.2 62 59.7
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 4.3e-10 70.1 109 40.4
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 8.1e-09 65.9 46 69.6
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 7.5e-07 59.3 43 65.1


User provided reference genes

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