Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2537 Acer truncatum HOM05D004849 ORTHO05D005955 5.0e-162 574.3 281 100.0
Ciclev10006509m.g Citrus clementina HOM05D004849 ORTHO05D005955 3.0e-146 521.9 281 90.0
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 7.3e-145 517.3 281 87.5
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 9.6e-145 516.9 281 89.3
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 3.6e-144 515.0 281 88.6
TWI73G0956 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 3.6e-144 515.0 281 88.6
ClCG05G005350 Citrullus lanatus HOM05D004849 ORTHO05D005955 4.7e-144 514.6 281 88.3
Cfa015600 Carpinus fangiana HOM05D004849 ORTHO05D005955 8.1e-144 513.8 281 88.6
Sed0011286 Sechium edule HOM05D004849 ORTHO05D005955 1.8e-143 512.7 281 87.9
CsaV3_3G013600 Cucumis sativus L. HOM05D004849 ORTHO05D005955 2.4e-143 512.3 281 87.5
Dinv38407 Davidia involucrata HOM05D004849 ORTHO05D005955 4.0e-143 511.5 281 87.9
Thecc.04G224600 Theobroma cacao HOM05D004849 ORTHO05D005955 4.0e-143 511.5 281 87.5
MELO3C006555.2 Cucumis melo HOM05D004849 ORTHO05D005955 5.2e-143 511.1 281 87.5
CiPaw.01G161400 Carya illinoinensis HOM05D004849 ORTHO05D005955 8.9e-143 510.4 281 87.5
TWI09G1150 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 2.6e-142 508.8 281 88.3
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 3.4e-142 508.4 281 86.8
TAR362G1319 Trochodendron aralioides HOM05D004849 ORTHO05D005955 7.6e-142 507.3 281 86.5
Manes.03G182800 Manihot esculenta HOM05D004849 ORTHO05D005955 9.9e-142 506.9 281 86.5
GSVIVG01017905001 Vitis vinifera HOM05D004849 ORTHO05D005955 9.9e-142 506.9 281 86.5
Manes.15G024600 Manihot esculenta HOM05D004849 ORTHO05D005955 1.3e-141 506.5 281 87.9
Duzib151G0519 Durio zibethinus HOM05D004849 ORTHO05D005955 8.4e-141 503.8 281 85.8
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 1.1e-140 503.4 278 85.3
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 1.4e-140 503.1 281 86.1
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 1.4e-140 503.1 281 85.4
Rhsim04G0203300 Rhododendron simsii HOM05D004849 ORTHO05D005955 2.4e-140 502.3 281 86.8
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 3.2e-140 501.9 279 86.4
TAR633G1443 Trochodendron aralioides HOM05D004849 ORTHO05D005955 4.2e-140 501.5 281 86.1
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 9.3e-140 500.4 281 86.1
PSO302G0110 Papaver somniferum HOM05D004849 ORTHO05D005955 1.6e-139 499.6 281 84.7
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 1.6e-139 499.6 282 85.5
Gohir.A09G213680 Gossypium hirsutum HOM05D004849 ORTHO05D005955 2.1e-139 499.2 281 85.1
Potri.008G204000 Populus trichocarpa HOM05D004849 ORTHO05D005955 2.1e-139 499.2 281 86.5
COL.COLO4_26630 Corchorus olitorius HOM05D004849 ORTHO05D005955 2.7e-139 498.8 281 85.4
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 4.6e-139 498.0 281 85.1
Gohir.D09G216000 Gossypium hirsutum HOM05D004849 ORTHO05D005955 6.0e-139 497.7 281 84.7
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 1.0e-138 496.9 306 81.0
PGSC0003DMG400008991 Solanum tuberosum HOM05D004849 ORTHO05D005955 1.7e-138 496.1 281 84.7
vmacro19618 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 1.7e-138 496.1 281 85.1
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 2.3e-138 495.7 281 84.3
Sc13g0004120 Simmondsia chinensis HOM05D004849 ORTHO05D005955 3.0e-138 495.4 281 85.1
Sopen01g031590 Solanum pennellii HOM05D004849 ORTHO05D005955 3.0e-138 495.4 281 85.1
Potri.010G031900 Populus trichocarpa HOM05D004849 ORTHO05D005955 3.9e-138 495.0 281 86.5
Solyc01g079840.3 Solanum lycopersicum HOM05D004849 ORTHO05D005955 3.9e-138 495.0 281 84.7
DCAR_027166 Daucus carota HOM05D004849 ORTHO05D005955 5.1e-138 494.6 281 84.3
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 5.1e-138 494.6 280 85.4
Gorai.006G236400 Gossypium raimondii HOM05D004849 ORTHO05D005955 6.6e-138 494.2 282 84.8
DCAR_024593 Daucus carota HOM05D000983 ORTHO05D005955 8.7e-138 493.8 281 84.7
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 1.9e-137 492.7 281 83.6
QL06p003788 Quercus lobata HOM05D004849 ORTHO05D005955 2.5e-137 492.3 280 83.9
Sabra08G0157700 Salix brachista HOM05D004849 ORTHO05D005955 4.3e-137 491.5 281 84.7
Medtr4g131690 Medicago truncatula HOM05D004849 ORTHO05D005955 5.6e-137 491.1 281 84.3
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 9.6e-137 490.3 279 83.9
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 1.3e-136 490.0 279 84.2
arahy.Tifrunner.gnm1.ann1.75KEF6 Arachis hypogaea HOM05D004849 ORTHO05D005955 2.1e-136 489.2 281 82.6
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 2.1e-136 489.2 281 83.3
VMungo1215G1989 Vigna mungo HOM05D004849 ORTHO05D005955 2.1e-136 489.2 281 83.3
Lalb_Chr18g0056171 Lupinus albus HOM05D004849 ORTHO05D005955 2.8e-136 488.8 281 82.9
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.6e-136 488.4 279 83.9
Lalb_Chr20g0118511 Lupinus albus HOM05D004849 ORTHO05D005955 3.6e-136 488.4 281 82.6
Lj6A574T38 Lonicera japonica HOM05D004849 ORTHO05D005955 6.2e-136 487.6 281 83.6
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.4e-135 486.5 279 82.8
arahy.Tifrunner.gnm1.ann1.U1U343 Arachis hypogaea HOM05D004849 ORTHO05D005955 1.8e-135 486.1 279 82.4
Ca_21102_v3 Cicer arietinum L. HOM05D004849 ORTHO05D005955 1.8e-135 486.1 281 82.2
Lj4g0022520 Lotus japonicus HOM05D004849 ORTHO05D005955 3.1e-135 485.3 281 82.6
ECA236G3497 Erigeron canadensis HOM05D004849 ORTHO05D005955 2.6e-134 482.3 281 82.9
Phvul.003G091500 Phaseolus vulgaris HOM05D004849 ORTHO05D005955 5.8e-134 481.1 281 82.2
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 1.3e-133 479.9 279 82.8
Glyma.17G016000 Glycine max HOM05D004849 ORTHO05D005955 1.3e-133 479.9 281 81.1
CAN.G69.23 Capsicum annuum HOM05D004849 ORTHO05D005955 1.7e-133 479.6 281 82.6
Nn1g02186 Nelumbo nucifera HOM05D004849 ORTHO05D005955 2.9e-133 478.8 281 81.1
Cc03_g03260 Coffea canephora HOM05D004849 ORTHO05D005955 3.8e-133 478.4 281 81.5
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 4.9e-133 478.0 309 76.4
C03p10980 Brassica napus HOM05D004849 ORTHO05D005955 8.4e-133 477.2 281 82.6
BolC3t13567H Brassica oleracea HOM05D004849 ORTHO05D005955 8.4e-133 477.2 281 82.6
Ah.04g154300 Amaranthus hybridus HOM05D004849 ORTHO05D005955 1.1e-132 476.9 277 82.7
EL10As3g23293 Beta vulgaris HOM05D004849 ORTHO05D005955 1.4e-132 476.5 281 81.9
A03p09400 Brassica napus HOM05D004849 ORTHO05D005955 1.9e-132 476.1 281 82.6
BraA03t10258Z Brassica rapa HOM05D004849 ORTHO05D005955 1.9e-132 476.1 281 82.6
Oeu059240.1 Olea europaea HOM05D004849 ORTHO05D005955 1.9e-132 476.1 280 82.1
MSTRG.4003 Avicennia marina HOM05D004849 ORTHO05D005955 5.4e-132 474.6 281 81.9
Thhalv10013467m.g Eutrema salsugineum HOM05D004849 ORTHO05D005955 5.4e-132 474.6 281 82.9
BraA10t44115Z Brassica rapa HOM05D004849 ORTHO05D005955 4.6e-131 471.5 277 81.9
HanXRQChr16g0508681 Helianthus annuus HOM05D004849 ORTHO05D005955 4.6e-131 471.5 281 81.9
A10p20450 Brassica napus HOM05D004849 ORTHO05D005955 7.9e-131 470.7 277 81.9
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 7.9e-131 470.7 266 85.0
BcaC04g18590 Brassica carinata HOM05D004849 ORTHO05D005955 1.0e-130 470.3 277 81.6
BcaB08g36596 Brassica carinata HOM05D004849 ORTHO05D005955 1.3e-130 469.9 277 81.6
Aa31LG11G10460 Aethionema arabicum HOM05D004849 ORTHO05D005955 3.0e-130 468.8 282 80.9
Lj6C576T2 Lonicera japonica HOM05D004849 ORTHO05D005955 3.0e-130 468.8 286 81.1
C09p57080 Brassica napus HOM05D004849 ORTHO05D005955 8.7e-130 467.2 277 81.2
BolC9t58573H Brassica oleracea HOM05D004849 ORTHO05D005955 1.1e-129 466.8 277 81.2
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 9.6e-129 463.8 282 79.1
SGA_v2.0_scaffold237G43812 Striga asiatica HOM05D004849 ORTHO05D005955 2.1e-128 462.6 281 79.0
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 6.9e-127 457.6 281 79.7
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 3.4e-126 455.3 281 79.0
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 2.9e-125 452.2 281 77.2
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 4.2e-124 448.4 281 78.6
AUR62038191 Chenopodium quinoa HOM05D004849 ORTHO05D005955 7.1e-124 447.6 281 78.6
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 2.1e-123 446.0 269 79.6
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 2.7e-123 445.7 281 77.9
Migut.G00304 Erythranthe guttata HOM05D004849 ORTHO05D005955 7.9e-123 444.1 281 77.2
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 1.0e-122 443.7 282 77.3
Eucgr.H03570 Eucalyptus grandis HOM05D004849 ORTHO05D005955 1.3e-122 443.4 280 78.9
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 1.9e-121 439.5 281 74.0
Zm00001eb332890 Zea mays HOM05D004849 ORTHO05D005955 3.3e-121 438.7 276 75.0
BcaB01g05137 Brassica carinata HOM05D004849 ORTHO05D005955 9.6e-121 437.2 281 77.9
BcaB01g04873 Brassica carinata HOM05D004849 ORTHO05D005955 1.3e-120 436.8 281 77.6
SEGI_19294 Sequoiadendron giganteum HOM05D004849 ORTHO05D005955 8.2e-120 434.1 282 73.4
Duzib212G0178 Durio zibethinus HOM05D004849 ORTHO05D005955 4.0e-119 431.8 281 77.2
Os01g0271500 Oryza sativa ssp. japonica HOM05D004849 ORTHO05D005955 5.8e-118 427.9 275 72.7
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 3.9e-114 415.2 291 74.2
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 4.3e-113 411.8 236 84.3
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 1.4e-108 396.7 218 86.2
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 1.3e-104 383.6 278 69.4
MD16G1186500 Malus domestica HOM05D004849 ORTHO05D005955 7.4e-97 357.8 190 88.4
SHI00393 Sapria himalayana HOM05D004849 ORTHO05D005955 8.5e-93 344.4 274 64.2
vmacro19827 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 6.7e-90 334.7 181 87.3
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 2.0e-89 333.2 283 58.0
Mapoly0032s0081 Marchantia polymorpha HOM05D004849 ORTHO05D005955 4.8e-88 328.6 283 57.6
Pp3c19_5590 Physcomitrium patens HOM05D004849 ORTHO05D005955 4.1e-87 325.5 283 58.3
Nitab4.5_0000630g0030 Nicotiana tabacum HOM05D004849 ORTHO05D005955 2.6e-86 322.8 195 82.6
SMO141G0184 Selaginella moellendorffii HOM05D004849 ORTHO05D005955 2.6e-86 322.8 270 58.5
PRCOL_00002962 Prasinoderma coloniale HOM05D004849 ORTHO05D005955 3.6e-83 312.4 252 59.5
Sed0000406 Sechium edule HOM05D004849 ORTHO05D005955 2.7e-75 286.2 146 93.8
CBR_g30851 Chara braunii HOM05D004849 ORTHO05D005955 6.1e-75 285.0 237 59.5
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 2.6e-73 279.6 236 61.0
Psat4g008440 Pisum sativum HOM05D004849 ORTHO05D005955 5.7e-73 278.5 147 89.8
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 8.3e-72 274.6 146 88.4
MSTRG.10007 Avicennia marina HOM05D004849 ORTHO05D005955 3.1e-71 272.7 147 86.4
MCO07G571 Micromonas commoda HOM05D004849 ORTHO05D005955 1.2e-70 270.8 235 56.6
FAN17G1787 Fragaria x ananassa HOM05D004849 ORTHO05D005955 6.1e-67 258.5 348 45.1
QL05p054428 Quercus lobata HOM05D004849 ORTHO05D005955 2.3e-53 213.4 105 89.5
Nitab4.5_0012513g0010 Nicotiana tabacum HOM05D004849 ORTHO05D005955 1.2e-51 207.6 133 75.9
Haze_27108 Corylus avellana HOM05D004849 ORTHO05D005955 1.5e-49 200.7 253 40.7
SalBow8G2518 Salvia bowleyana HOM05D004849 ORTHO05D005955 3.4e-41 172.9 175 54.9
MBI19_g14315_MAGBIO Magnolia biondii HOM05D004849 ORTHO05D005955 6.2e-35 152.1 98 77.6
Oeu030323.1 Olea europaea HOM05D004849 ORTHO05D005955 1.1e-34 151.4 164 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 6.8e-34 148.7 86 70.9
RcHm_v2.0_Chr1g0343821 Rosa chinensis HOM05D004849 ORTHO05D005955 8.9e-34 148.3 86 81.4
RcHm_v2.0_Chr1g0328651 Rosa chinensis HOM05D004849 ORTHO05D005955 1.2e-30 137.9 86 77.9
SalBow1G6287 Salvia bowleyana HOM05D004849 ORTHO05D005955 1.0e-21 108.2 101 53.5
FAN03G2641 Fragaria x ananassa HOM05D001971 ORTHO05D029608 8.4e-16 88.6 62 74.2
FAN10G1946 Fragaria x ananassa HOM05D001971 ORTHO05D029608 8.4e-16 88.6 62 74.2
Zm00001eb346970 Zea mays HOM05D004849 ORTHO05D443254 9.3e-15 85.1 113 44.2
Duzib248G1279 Durio zibethinus HOM05D004318 ORTHO05D005690 1.9e-12 77.4 252 27.0
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 5.6e-12 75.9 67 56.7
CANSAT11G1266 Cannabis sativa HOM05D004318 ORTHO05D005690 1.1e-07 61.6 167 29.3
HPP92_011807 Vanilla planifolia HOM05D004318 ORTHO05D005690 3.2e-07 60.1 181 29.8
HPP92_011808 Vanilla planifolia HOM05D004318 ORTHO05D005690 3.2e-07 60.1 181 29.8
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 4.2e-07 59.7 178 30.3
FvH4_2g09750 Fragaria vesca HOM05D004318 ORTHO05D005690 5.5e-07 59.3 197 28.4
FAN20G2962 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 59.3 197 28.4
FAN24G0421 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 59.3 197 28.4
FAN24G3142 Fragaria x ananassa HOM05D004318 ORTHO05D005690 7.1e-07 58.9 197 28.4
MELO3C023325.2 Cucumis melo HOM05D004318 ORTHO05D005690 9.3e-07 58.5 188 30.3
MBI11_g32384_MAGBIO Magnolia biondii HOM05D004318 ORTHO05D005690 9.3e-07 58.5 179 31.3
CDE05G2827 Ceratophyllum demersum HOM05D004318 ORTHO05D005690 1.2e-06 58.2 207 28.5
CsaV3_2G015050 Cucumis sativus L. HOM05D004318 ORTHO05D005690 1.2e-06 58.2 188 29.8
FAN27G0594 Fragaria x ananassa HOM05D004318 ORTHO05D005690 1.2e-06 58.2 197 27.9
MSTRG.16828 Avicennia marina HOM05D004318 ORTHO05D005690 1.6e-06 57.8 187 28.3
Cc02_g17210 Coffea canephora HOM05D004318 ORTHO05D005690 1.6e-06 57.8 224 28.6
Manes.04G086600 Manihot esculenta HOM05D004318 ORTHO05D005690 1.6e-06 57.8 188 27.1
Rhsim11G0180700 Rhododendron simsii HOM05D004318 ORTHO05D005690 1.6e-06 57.8 179 29.6
Sc18g0005150 Simmondsia chinensis HOM05D004318 ORTHO05D005690 1.6e-06 57.8 179 30.2
Actinidia02232 Actinidia chinensis HOM05D004318 ORTHO05D005690 2.1e-06 57.4 210 28.6
Cre06.g296983 Chlamydomonas reinhardtii HOM05D004318 ORTHO05D005690 2.1e-06 57.4 102 35.3
ClCG11G004120 Citrullus lanatus HOM05D004318 ORTHO05D005690 2.1e-06 57.4 202 28.2
RcHm_v2.0_Chr6g0266041 Rosa chinensis HOM05D004318 ORTHO05D005690 2.1e-06 57.4 197 27.4
arahy.Tifrunner.gnm1.ann1.2GC3QC Arachis hypogaea HOM05D004318 ORTHO05D005690 3.5e-06 56.6 187 28.9
arahy.Tifrunner.gnm1.ann1.7SB82T Arachis hypogaea HOM05D004318 ORTHO05D005690 3.5e-06 56.6 187 28.9
FAN15G3707 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.5e-06 56.6 197 27.4
Lsat_1_v5_gn_7_91601 Lactuca sativa HOM05D004318 ORTHO05D005690 3.5e-06 56.6 171 28.7
MD10G1068200 Malus domestica HOM05D004318 ORTHO05D005690 3.5e-06 56.6 178 29.2
vmacro02077 Vaccinium macrocarpon HOM05D004318 ORTHO05D005690 3.5e-06 56.6 179 29.6
Zm00001eb325940 Zea mays HOM05D004318 ORTHO05D005690 3.5e-06 56.6 186 28.0
Lj3g0018181 Lotus japonicus HOM05D004318 ORTHO05D005690 4.6e-06 56.2 178 29.2
CSS0003672 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 6.0e-06 55.8 178 29.8
CSS0008255 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 6.0e-06 55.8 178 29.8
Dinv23486 Davidia involucrata HOM05D004318 ORTHO05D005690 6.0e-06 55.8 178 28.7
Medtr8g037355 Medicago truncatula HOM05D004318 ORTHO05D005690 6.0e-06 55.8 191 28.8
TPR.G1833 Trifolium pratense HOM05D004318 ORTHO05D005690 6.0e-06 55.8 181 29.3
PGR042G0537 Punica granatum HOM05D004318 ORTHO05D005690 7.9e-06 55.5 179 29.1
Sed0003378 Sechium edule HOM05D004318 ORTHO05D005690 7.9e-06 55.5 188 28.7


User provided reference genes

Program Settings