Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.1e-184 648.3 421 100.0
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 6.2e-55 219.2 436 41.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.6e-50 203.0 437 37.8
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 4.7e-47 193.0 430 36.3
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 8.1e-47 192.2 438 35.6
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.4e-45 186.8 506 33.4
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 3.4e-45 186.8 443 35.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.3e-41 174.9 426 37.6
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.1e-39 167.5 447 43.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 6.9e-38 162.5 451 34.1
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 5.8e-37 159.5 423 44.2
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 5.8e-37 159.5 437 40.7
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 7.6e-37 159.1 420 35.0
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-36 157.1 464 34.5
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 8.4e-36 155.6 466 32.0
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.9e-35 154.5 429 31.9
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 3.2e-35 153.7 428 35.0
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.2e-35 153.3 430 40.2
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.2e-34 151.8 422 38.6
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.7e-34 150.6 470 34.7
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 4.6e-34 149.8 483 30.4
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.8e-34 149.1 456 35.5
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 7.8e-34 149.1 419 32.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 7.8e-34 149.1 422 31.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-33 148.3 492 30.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.3e-33 148.3 423 32.9
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.3e-33 147.5 459 32.7
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 8.7e-33 145.6 482 36.7
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.1e-32 145.2 535 29.3
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.9e-32 144.4 431 31.8
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 5.6e-32 142.9 469 36.2
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 5.6e-32 142.9 416 32.0
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 7.3e-32 142.5 462 30.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.6e-32 142.1 530 29.1
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.6e-32 142.1 194 47.4
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-31 141.7 478 41.0
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.3e-31 141.7 440 30.7
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.3e-31 141.7 435 38.4
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.6e-31 141.4 430 30.7
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.6e-31 141.4 410 34.6
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.6e-31 140.2 450 35.1
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.6e-31 140.2 466 38.4
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 8.1e-31 139.0 451 31.7
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.1e-31 139.0 423 34.8
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-30 138.7 478 40.8
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.1e-30 138.7 514 30.9
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-30 138.3 478 31.0
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.4e-30 137.5 456 34.2
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 3.1e-30 137.1 422 37.9
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.0e-30 136.7 426 31.2
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 5.3e-30 136.3 447 41.8
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 6.9e-30 136.0 465 38.7
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 6.9e-30 136.0 429 30.1
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 6.9e-30 136.0 420 32.1
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 6.9e-30 136.0 421 30.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.2e-29 135.2 421 36.1
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.2e-29 135.2 444 30.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.5e-29 134.8 422 28.4
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.5e-29 134.8 416 29.3
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.5e-29 134.8 416 29.3
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.4e-29 133.7 430 30.5
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 3.4e-29 133.7 481 28.3
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 4.5e-29 133.3 452 29.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 4.5e-29 133.3 443 32.7
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.8e-29 132.9 422 30.3
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 5.8e-29 132.9 451 30.4
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.9e-28 130.6 449 32.3
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 3.8e-28 130.2 482 30.3
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 3.8e-28 130.2 437 29.3
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 6.4e-28 129.4 477 30.4
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 6.4e-28 129.4 477 30.4
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.4e-27 128.3 417 32.1
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.4e-27 128.3 430 29.3
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.4e-27 127.5 412 30.1
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.2e-27 127.1 445 34.2
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 4.2e-27 126.7 492 32.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 7.1e-27 125.9 406 29.3
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 9.3e-27 125.6 201 39.3
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.2e-26 125.2 451 27.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.1e-26 124.4 416 29.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.1e-26 124.4 419 29.4
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.1e-26 124.4 467 27.8
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 4.6e-26 123.2 467 27.2
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 6.0e-26 122.9 489 31.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 7.9e-26 122.5 122 53.3
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.0e-25 122.1 141 53.2
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.3e-25 121.7 493 27.6
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.8e-25 121.3 443 29.3
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.3e-25 120.9 439 29.8
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.3e-25 120.9 222 43.7
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 5.1e-25 119.8 432 32.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 6.7e-25 119.4 463 27.4
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 6.7e-25 119.4 425 30.4
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 8.7e-25 119.0 125 51.2
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 8.7e-25 119.0 534 32.2
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.1e-24 118.6 510 33.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.5e-24 118.2 560 27.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.9e-24 117.9 206 40.3
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.9e-24 117.9 442 29.0
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.5e-24 117.5 435 31.3
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 7.4e-24 115.9 423 29.1
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 9.6e-24 115.5 140 45.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.6e-23 114.8 431 33.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 3.7e-23 113.6 133 48.1
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.7e-23 113.6 132 51.5
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.7e-23 113.6 132 51.5
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 4.8e-23 113.2 126 54.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.2e-23 112.8 120 51.7
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.1e-22 112.1 471 40.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.8e-22 111.3 437 32.0
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.8e-22 111.3 411 39.7
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 4.0e-22 110.2 437 32.0
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 4.0e-22 110.2 121 52.1
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-21 108.6 414 29.2
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-21 108.6 414 29.2
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.5e-21 108.2 450 28.2
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-21 108.2 503 32.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.4e-21 107.1 547 26.5
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 3.4e-21 107.1 117 51.3
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 5.8e-21 106.3 503 32.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.9e-20 104.0 521 27.1
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.4e-19 101.7 163 43.6
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.2e-19 100.1 427 26.9
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.5e-19 99.8 162 41.4
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.1e-18 97.8 158 39.9
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 3.5e-18 97.1 134 44.8
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.9e-18 95.9 162 38.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 7.9e-18 95.9 98 53.1
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.0e-17 95.5 496 28.8
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.3e-17 95.1 144 41.7
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 8.7e-17 92.4 415 27.5
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.1e-14 85.5 132 38.6
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 4.0e-14 83.6 108 40.7
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.4e-13 80.5 124 36.3
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 1.0e-12 79.0 67 58.2
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.8e-12 77.0 97 47.4
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.9e-12 76.6 63 58.7
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 3.9e-09 67.0 53 58.5
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.1e-08 65.5 48 64.6
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.3e-08 63.5 51 54.9
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 5.7e-08 63.2 53 58.5
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 2.8e-07 60.8 53 56.6
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 2.8e-07 60.8 173 27.7
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 3.7e-07 60.5 52 57.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 3.7e-07 60.5 52 57.7
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.1e-06 58.9 40 65.0
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 2.4e-06 57.8 126 32.5
HPP92_002725 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-06 57.8 52 53.8
HPP92_027936 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-06 57.8 52 53.8


User provided reference genes

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