Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 1.9e-96 355.9 188 100.0
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 1.2e-47 193.7 194 59.8
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.0e-41 171.8 180 53.3
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.5e-40 167.5 180 51.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 2.3e-38 162.9 189 50.3
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 3.1e-38 162.5 180 56.7
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 3.1e-38 162.5 194 55.7
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 4.0e-38 162.2 187 56.1
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 2.0e-37 159.8 194 55.2
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 2.2e-36 156.4 196 52.6
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 2.9e-36 156.0 192 50.5
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.4e-35 152.9 197 47.7
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 9.2e-35 151.0 194 53.6
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 6.0e-34 148.3 189 51.9
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 5.1e-33 145.2 187 50.3
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 5.1e-33 145.2 214 46.7
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 5.1e-33 145.2 214 47.2
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.1e-31 139.8 212 45.8
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 2.0e-29 133.3 185 48.6
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 5.8e-29 131.7 204 44.1
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 5.8e-29 131.7 186 50.5
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.7e-28 130.2 188 46.8
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 3.2e-27 125.9 185 46.5
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 7.8e-26 121.3 186 42.5
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.0e-25 120.9 201 42.3
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.7e-25 120.2 178 43.8
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 2.3e-25 119.8 193 45.1
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 3.0e-25 119.4 184 44.0
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.9e-25 119.0 199 40.7
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 5.1e-25 118.6 191 44.0
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 4.3e-24 115.5 199 39.7
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 1.6e-23 113.6 189 40.7
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.1e-23 113.2 225 39.6
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 2.1e-23 113.2 207 40.1
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.8e-23 112.8 191 40.3
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 3.6e-23 112.5 202 41.1
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 1.4e-22 110.5 185 40.5
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 9.0e-22 107.8 182 42.9
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.5e-21 107.1 178 39.3
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 3.4e-21 105.9 215 38.1
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.4e-21 105.5 197 42.1
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 9.9e-21 104.4 182 40.7
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.9e-20 102.8 194 36.6
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 2.9e-20 102.8 196 39.3
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 3.8e-20 102.4 194 36.6
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 4.9e-20 102.1 187 38.5
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.4e-19 99.8 191 37.7
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 2.4e-19 99.8 190 37.9
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.4e-19 99.8 190 36.3
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 2.4e-19 99.8 197 35.0
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.2e-19 99.4 181 40.3
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 4.2e-19 99.0 240 34.6
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 9.3e-19 97.8 193 37.8
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.6e-18 97.1 193 37.3
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 2.1e-18 96.7 224 35.3
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 2.7e-18 96.3 182 41.2
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 4.6e-18 95.5 195 35.9
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 4.6e-18 95.5 195 37.9
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 1.7e-17 93.6 204 34.8
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 1.7e-17 93.6 204 34.8
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 2.3e-17 93.2 204 35.3
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 3.0e-17 92.8 205 37.1
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 3.0e-17 92.8 193 36.3
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 3.0e-17 92.8 197 37.1
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.9e-17 92.4 197 37.6
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 3.9e-17 92.4 195 35.9
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.9e-17 92.4 189 34.9
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 5.1e-17 92.0 181 38.7
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 2.5e-16 89.7 181 36.5
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 3.3e-16 89.4 193 36.3
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 4.3e-16 89.0 180 39.4
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 7.3e-16 88.2 205 35.6
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 7.3e-16 88.2 233 32.2
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 9.6e-16 87.8 215 35.3
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 4.8e-15 85.5 192 33.3
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.8e-14 83.6 191 35.1
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 9.0e-14 81.3 174 35.1
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 2.0e-13 80.1 80 51.2
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 3.4e-13 79.3 111 48.6
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 4.5e-13 79.0 175 35.4
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 7.6e-13 78.2 216 31.5
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 9.9e-13 77.8 203 33.5
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.3e-12 77.4 225 32.4
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 2.9e-12 76.3 226 32.7
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 6.4e-12 75.1 206 31.6
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 6.4e-12 75.1 196 33.7
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.1e-11 74.3 206 34.0
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 2.4e-11 73.2 72 55.6
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 3.2e-11 72.8 188 27.7
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 4.2e-11 72.4 167 35.9
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 4.2e-11 72.4 234 28.6
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 9.3e-11 71.2 190 32.6
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 2.7e-10 69.7 236 27.1
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 4.6e-10 68.9 200 32.0
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 7.9e-10 68.2 201 29.4
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 7.9e-10 68.2 190 30.5
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.3e-09 67.4 158 36.1
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 3.9e-09 65.9 189 30.7
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 5.1e-09 65.5 178 33.1
CANSAT01G1417 Cannabis sativa HOM05D008367 ORTHO05D010529 5.1e-09 65.5 185 29.7
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 5.1e-09 65.5 209 31.1
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 8.7e-09 64.7 185 35.1
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 3.3e-08 62.8 183 32.8
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 3.3e-08 62.8 185 36.2
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 4.3e-08 62.4 182 28.0
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 5.6e-08 62.0 187 32.6
COL.COLO4_05894 Corchorus olitorius HOM05D008367 ORTHO05D010529 7.4e-08 61.6 200 32.5
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 7.4e-08 61.6 193 31.1
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 2.1e-07 60.1 131 32.8
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 2.8e-07 59.7 75 46.7
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 6.2e-07 58.5 72 50.0
MD05G1197200 Malus domestica HOM05D008367 ORTHO05D010529 1.1e-06 57.8 185 27.0
Prupe.8G223700 Prunus persica HOM05D008367 ORTHO05D010529 1.8e-06 57.0 181 28.7
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 1.8e-06 57.0 182 26.9
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.1e-06 56.2 129 36.4
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 3.1e-06 56.2 192 29.7
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 3.1e-06 56.2 99 41.4
Psat3g056920 Pisum sativum HOM05D008367 ORTHO05D010529 4.0e-06 55.8 182 28.6
Gohir.A07G148700 Gossypium hirsutum HOM05D008367 ORTHO05D010529 5.3e-06 55.5 202 28.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.9e-06 55.1 190 27.9
Manes.13G034100 Manihot esculenta HOM05D008367 ORTHO05D010529 9.0e-06 54.7 196 24.5


User provided reference genes

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